Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17215 | 5' | -53.1 | NC_004333.2 | + | 45732 | 1.09 | 0.00141 |
Target: 5'- cGGCGCGAACGUGCCGAUCGCGAUAUAc -3' miRNA: 3'- -CCGCGCUUGCACGGCUAGCGCUAUAU- -5' |
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17215 | 5' | -53.1 | NC_004333.2 | + | 47787 | 0.77 | 0.231466 |
Target: 5'- cGGCGCGcGACGUGCCGGcgagCGUGAa--- -3' miRNA: 3'- -CCGCGC-UUGCACGGCUa---GCGCUauau -5' |
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17215 | 5' | -53.1 | NC_004333.2 | + | 23235 | 0.77 | 0.231466 |
Target: 5'- cGGCgGCGAACGcGCCGGUCGUGuUGUu -3' miRNA: 3'- -CCG-CGCUUGCaCGGCUAGCGCuAUAu -5' |
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17215 | 5' | -53.1 | NC_004333.2 | + | 29951 | 0.77 | 0.250662 |
Target: 5'- uGCGCGAaaagcGCGUGCCGAgCGCGGc--- -3' miRNA: 3'- cCGCGCU-----UGCACGGCUaGCGCUauau -5' |
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17215 | 5' | -53.1 | NC_004333.2 | + | 15470 | 0.76 | 0.260061 |
Target: 5'- cGGCGCGcuuGGCGUGCCGAgcgcaacagggcugcUCGCGGc--- -3' miRNA: 3'- -CCGCGC---UUGCACGGCU---------------AGCGCUauau -5' |
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17215 | 5' | -53.1 | NC_004333.2 | + | 20448 | 0.75 | 0.300538 |
Target: 5'- cGGCGCGAAgccUGcGCCGGUCGUGAc--- -3' miRNA: 3'- -CCGCGCUU---GCaCGGCUAGCGCUauau -5' |
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17215 | 5' | -53.1 | NC_004333.2 | + | 20424 | 0.75 | 0.308259 |
Target: 5'- cGGCGUucACGaaGCCGGUCGCGGUAc- -3' miRNA: 3'- -CCGCGcuUGCa-CGGCUAGCGCUAUau -5' |
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17215 | 5' | -53.1 | NC_004333.2 | + | 8684 | 0.75 | 0.31613 |
Target: 5'- cGGCguucagcacgGCGAACGUGCCGAcCGUGAc--- -3' miRNA: 3'- -CCG----------CGCUUGCACGGCUaGCGCUauau -5' |
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17215 | 5' | -53.1 | NC_004333.2 | + | 8996 | 0.75 | 0.31613 |
Target: 5'- cGGCGCGAACGaaGCCGcGUCGCGc---- -3' miRNA: 3'- -CCGCGCUUGCa-CGGC-UAGCGCuauau -5' |
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17215 | 5' | -53.1 | NC_004333.2 | + | 25233 | 0.75 | 0.324152 |
Target: 5'- cGGCagGCGAGCGUGUCGAUCG-GAg--- -3' miRNA: 3'- -CCG--CGCUUGCACGGCUAGCgCUauau -5' |
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17215 | 5' | -53.1 | NC_004333.2 | + | 18494 | 0.73 | 0.38449 |
Target: 5'- cGGUGUcGACGccGCCGAUCGCGAg--- -3' miRNA: 3'- -CCGCGcUUGCa-CGGCUAGCGCUauau -5' |
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17215 | 5' | -53.1 | NC_004333.2 | + | 9190 | 0.73 | 0.412531 |
Target: 5'- -uCGCGAcgGCaGUGUCGAUCGCGGUGc- -3' miRNA: 3'- ccGCGCU--UG-CACGGCUAGCGCUAUau -5' |
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17215 | 5' | -53.1 | NC_004333.2 | + | 6717 | 0.72 | 0.431913 |
Target: 5'- cGCGcCGAGCGcgcUGCCGAgCGCGAUcgAg -3' miRNA: 3'- cCGC-GCUUGC---ACGGCUaGCGCUAuaU- -5' |
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17215 | 5' | -53.1 | NC_004333.2 | + | 41118 | 0.72 | 0.461955 |
Target: 5'- cGGCGCGaAACGUGUCGAcgaUCGUGc---- -3' miRNA: 3'- -CCGCGC-UUGCACGGCU---AGCGCuauau -5' |
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17215 | 5' | -53.1 | NC_004333.2 | + | 697 | 0.72 | 0.472211 |
Target: 5'- aGCGCGAuCGUGCCGccgccCGCGAg--- -3' miRNA: 3'- cCGCGCUuGCACGGCua---GCGCUauau -5' |
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17215 | 5' | -53.1 | NC_004333.2 | + | 11634 | 0.71 | 0.482581 |
Target: 5'- cGCGCGAACGUGUCGAaguagCGCu----- -3' miRNA: 3'- cCGCGCUUGCACGGCUa----GCGcuauau -5' |
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17215 | 5' | -53.1 | NC_004333.2 | + | 13067 | 0.71 | 0.49306 |
Target: 5'- cGGCGCGAACGUcgauuuGUCGAUgCGCGc---- -3' miRNA: 3'- -CCGCGCUUGCA------CGGCUA-GCGCuauau -5' |
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17215 | 5' | -53.1 | NC_004333.2 | + | 1121 | 0.71 | 0.514322 |
Target: 5'- cGCGCGAAgucggugcCGUGCUGcgCGCGAc--- -3' miRNA: 3'- cCGCGCUU--------GCACGGCuaGCGCUauau -5' |
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17215 | 5' | -53.1 | NC_004333.2 | + | 35488 | 0.71 | 0.514322 |
Target: 5'- gGGCcgGUGAGCGUGCCGccUGCGAg--- -3' miRNA: 3'- -CCG--CGCUUGCACGGCuaGCGCUauau -5' |
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17215 | 5' | -53.1 | NC_004333.2 | + | 18958 | 0.7 | 0.535948 |
Target: 5'- aGCGUGGACGUGgCGAacCGCGAg--- -3' miRNA: 3'- cCGCGCUUGCACgGCUa-GCGCUauau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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