miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17215 5' -53.1 NC_004333.2 + 697 0.72 0.472211
Target:  5'- aGCGCGAuCGUGCCGccgccCGCGAg--- -3'
miRNA:   3'- cCGCGCUuGCACGGCua---GCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 774 0.67 0.735867
Target:  5'- cGGCgcucGCGGGCGgcgGCaCGAUCGCGc---- -3'
miRNA:   3'- -CCG----CGCUUGCa--CG-GCUAGCGCuauau -5'
17215 5' -53.1 NC_004333.2 + 796 0.67 0.767581
Target:  5'- ---uUGAGCGUGCCGGUCGCc----- -3'
miRNA:   3'- ccgcGCUUGCACGGCUAGCGcuauau -5'
17215 5' -53.1 NC_004333.2 + 1121 0.71 0.514322
Target:  5'- cGCGCGAAgucggugcCGUGCUGcgCGCGAc--- -3'
miRNA:   3'- cCGCGCUU--------GCACGGCuaGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 2371 0.7 0.576725
Target:  5'- -aCGCGGGCGUGCCGGccacgguacacgacUUGCGAc--- -3'
miRNA:   3'- ccGCGCUUGCACGGCU--------------AGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 2745 0.68 0.685448
Target:  5'- cGGCGCGAcgcugcaagcugccgGCGUugcggcugauacGCCGGcaagCGCGAUGa- -3'
miRNA:   3'- -CCGCGCU---------------UGCA------------CGGCUa---GCGCUAUau -5'
17215 5' -53.1 NC_004333.2 + 2757 0.69 0.636145
Target:  5'- -uCGCGGccgcCGUGCCGGUCGCGu---- -3'
miRNA:   3'- ccGCGCUu---GCACGGCUAGCGCuauau -5'
17215 5' -53.1 NC_004333.2 + 4725 0.66 0.777877
Target:  5'- cGCGCGccGGCcUGCCcgucgccauGAUCGCGAUGg- -3'
miRNA:   3'- cCGCGC--UUGcACGG---------CUAGCGCUAUau -5'
17215 5' -53.1 NC_004333.2 + 6669 0.66 0.807773
Target:  5'- cGGCGCuGGGCGgcgcGCCGuggCgGCGAUGc- -3'
miRNA:   3'- -CCGCG-CUUGCa---CGGCua-G-CGCUAUau -5'
17215 5' -53.1 NC_004333.2 + 6717 0.72 0.431913
Target:  5'- cGCGcCGAGCGcgcUGCCGAgCGCGAUcgAg -3'
miRNA:   3'- cCGC-GCUUGC---ACGGCUaGCGCUAuaU- -5'
17215 5' -53.1 NC_004333.2 + 8084 0.67 0.714159
Target:  5'- aGGCGacuGGACGacGCUGGUCGCGGc--- -3'
miRNA:   3'- -CCGCg--CUUGCa-CGGCUAGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 8562 0.67 0.767581
Target:  5'- -aCGCGGACGUuguggcuggcucGCCG-UCGCGAgGUAc -3'
miRNA:   3'- ccGCGCUUGCA------------CGGCuAGCGCUaUAU- -5'
17215 5' -53.1 NC_004333.2 + 8610 0.67 0.725061
Target:  5'- aGC-CGGGCaUGCCGGUCGCGcUGUu -3'
miRNA:   3'- cCGcGCUUGcACGGCUAGCGCuAUAu -5'
17215 5' -53.1 NC_004333.2 + 8684 0.75 0.31613
Target:  5'- cGGCguucagcacgGCGAACGUGCCGAcCGUGAc--- -3'
miRNA:   3'- -CCG----------CGCUUGCACGGCUaGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 8996 0.75 0.31613
Target:  5'- cGGCGCGAACGaaGCCGcGUCGCGc---- -3'
miRNA:   3'- -CCGCGCUUGCa-CGGC-UAGCGCuauau -5'
17215 5' -53.1 NC_004333.2 + 9190 0.73 0.412531
Target:  5'- -uCGCGAcgGCaGUGUCGAUCGCGGUGc- -3'
miRNA:   3'- ccGCGCU--UG-CACGGCUAGCGCUAUau -5'
17215 5' -53.1 NC_004333.2 + 9605 0.7 0.580065
Target:  5'- cGGCGCGGcauCG-GCCGGUUGCGc---- -3'
miRNA:   3'- -CCGCGCUu--GCaCGGCUAGCGCuauau -5'
17215 5' -53.1 NC_004333.2 + 9802 0.67 0.725061
Target:  5'- cGGCGCucAUGUcGCCGAcgcggcguuUCGCGAa--- -3'
miRNA:   3'- -CCGCGcuUGCA-CGGCU---------AGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 11634 0.71 0.482581
Target:  5'- cGCGCGAACGUGUCGAaguagCGCu----- -3'
miRNA:   3'- cCGCGCUUGCACGGCUa----GCGcuauau -5'
17215 5' -53.1 NC_004333.2 + 11708 0.66 0.788016
Target:  5'- aGCGcCGGgcgGCGUGCUGGcguccugCGCGAUGUc -3'
miRNA:   3'- cCGC-GCU---UGCACGGCUa------GCGCUAUAu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.