miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17215 5' -53.1 NC_004333.2 + 45732 1.09 0.00141
Target:  5'- cGGCGCGAACGUGCCGAUCGCGAUAUAc -3'
miRNA:   3'- -CCGCGCUUGCACGGCUAGCGCUAUAU- -5'
17215 5' -53.1 NC_004333.2 + 2757 0.69 0.636145
Target:  5'- -uCGCGGccgcCGUGCCGGUCGCGu---- -3'
miRNA:   3'- ccGCGCUu---GCACGGCUAGCGCuauau -5'
17215 5' -53.1 NC_004333.2 + 27521 0.67 0.735867
Target:  5'- --aGCGAucgACGUGUCGAUCGCa----- -3'
miRNA:   3'- ccgCGCU---UGCACGGCUAGCGcuauau -5'
17215 5' -53.1 NC_004333.2 + 25750 0.66 0.817369
Target:  5'- cGGCGUGAAg--GUCGGUUGCGGg--- -3'
miRNA:   3'- -CCGCGCUUgcaCGGCUAGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 20448 0.75 0.300538
Target:  5'- cGGCGCGAAgccUGcGCCGGUCGUGAc--- -3'
miRNA:   3'- -CCGCGCUU---GCaCGGCUAGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 8684 0.75 0.31613
Target:  5'- cGGCguucagcacgGCGAACGUGCCGAcCGUGAc--- -3'
miRNA:   3'- -CCG----------CGCUUGCACGGCUaGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 697 0.72 0.472211
Target:  5'- aGCGCGAuCGUGCCGccgccCGCGAg--- -3'
miRNA:   3'- cCGCGCUuGCACGGCua---GCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 11634 0.71 0.482581
Target:  5'- cGCGCGAACGUGUCGAaguagCGCu----- -3'
miRNA:   3'- cCGCGCUUGCACGGCUa----GCGcuauau -5'
17215 5' -53.1 NC_004333.2 + 18958 0.7 0.535948
Target:  5'- aGCGUGGACGUGgCGAacCGCGAg--- -3'
miRNA:   3'- cCGCGCUUGCACgGCUa-GCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 20733 0.69 0.624896
Target:  5'- cGGCGCGcGCGcUGCCGGacaUCGcCGAc--- -3'
miRNA:   3'- -CCGCGCuUGC-ACGGCU---AGC-GCUauau -5'
17215 5' -53.1 NC_004333.2 + 11974 0.7 0.580065
Target:  5'- cGCGCGucGACGaucgcgGCCGuAUCGCGGUGc- -3'
miRNA:   3'- cCGCGC--UUGCa-----CGGC-UAGCGCUAUau -5'
17215 5' -53.1 NC_004333.2 + 1121 0.71 0.514322
Target:  5'- cGCGCGAAgucggugcCGUGCUGcgCGCGAc--- -3'
miRNA:   3'- cCGCGCUU--------GCACGGCuaGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 23235 0.77 0.231466
Target:  5'- cGGCgGCGAACGcGCCGGUCGUGuUGUu -3'
miRNA:   3'- -CCG-CGCUUGCaCGGCUAGCGCuAUAu -5'
17215 5' -53.1 NC_004333.2 + 28682 0.69 0.602427
Target:  5'- cGGUGCGugcuGC-UGCCaGAUCGCGAg--- -3'
miRNA:   3'- -CCGCGCu---UGcACGG-CUAGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 29951 0.77 0.250662
Target:  5'- uGCGCGAaaagcGCGUGCCGAgCGCGGc--- -3'
miRNA:   3'- cCGCGCU-----UGCACGGCUaGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 35488 0.71 0.514322
Target:  5'- gGGCcgGUGAGCGUGCCGccUGCGAg--- -3'
miRNA:   3'- -CCG--CGCUUGCACGGCuaGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 29897 0.69 0.624896
Target:  5'- uGCGCGAuCGgGCCGcgCGCGGc--- -3'
miRNA:   3'- cCGCGCUuGCaCGGCuaGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 11888 0.69 0.636145
Target:  5'- gGGCGCGAGCaccuUGUCG-UCGCGGc--- -3'
miRNA:   3'- -CCGCGCUUGc---ACGGCuAGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 15470 0.76 0.260061
Target:  5'- cGGCGCGcuuGGCGUGCCGAgcgcaacagggcugcUCGCGGc--- -3'
miRNA:   3'- -CCGCGC---UUGCACGGCU---------------AGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 9190 0.73 0.412531
Target:  5'- -uCGCGAcgGCaGUGUCGAUCGCGGUGc- -3'
miRNA:   3'- ccGCGCU--UG-CACGGCUAGCGCUAUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.