miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17218 5' -54.8 NC_004333.2 + 45998 0.71 0.375428
Target:  5'- aCUCGGCGcCGAGggcUGGCACGGcCUGCg -3'
miRNA:   3'- -GAGCCGUaGCUU---GCCGUGUUcGACGa -5'
17218 5' -54.8 NC_004333.2 + 41704 0.71 0.403044
Target:  5'- -gCGGCAacuUCGGGCGGCAC-GGC-GCg -3'
miRNA:   3'- gaGCCGU---AGCUUGCCGUGuUCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 23597 0.71 0.403044
Target:  5'- aUCGGCGgcuaccCGAAaGGCGCGGuGCUGCa -3'
miRNA:   3'- gAGCCGUa-----GCUUgCCGUGUU-CGACGa -5'
17218 5' -54.8 NC_004333.2 + 3123 0.7 0.412531
Target:  5'- --gGGCAUCGucAACGGCGgCcAGCUGCc -3'
miRNA:   3'- gagCCGUAGC--UUGCCGU-GuUCGACGa -5'
17218 5' -54.8 NC_004333.2 + 1644 0.7 0.412531
Target:  5'- aUgGGCAUCG-ACGGCACGuugucGGCcgGCUu -3'
miRNA:   3'- gAgCCGUAGCuUGCCGUGU-----UCGa-CGA- -5'
17218 5' -54.8 NC_004333.2 + 48080 0.7 0.422155
Target:  5'- gCUCGGUGcCGAcgaGGCGCAGGCgGCa -3'
miRNA:   3'- -GAGCCGUaGCUug-CCGUGUUCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 41636 0.7 0.441801
Target:  5'- -gCGGCAgaUUGucgGGCGCGGGCUGCg -3'
miRNA:   3'- gaGCCGU--AGCuugCCGUGUUCGACGa -5'
17218 5' -54.8 NC_004333.2 + 13957 0.7 0.441801
Target:  5'- cCUUGGCGacuUCaGGCGGCggccggugcgcGCGAGCUGCg -3'
miRNA:   3'- -GAGCCGU---AGcUUGCCG-----------UGUUCGACGa -5'
17218 5' -54.8 NC_004333.2 + 11923 0.7 0.461955
Target:  5'- -cCGGCAgacggaagCGAuguacCGGCGCAAGCUGg- -3'
miRNA:   3'- gaGCCGUa-------GCUu----GCCGUGUUCGACga -5'
17218 5' -54.8 NC_004333.2 + 38204 0.7 0.461955
Target:  5'- gUCGGCGUCGAACGcGaagaACu-GCUGUa -3'
miRNA:   3'- gAGCCGUAGCUUGC-Cg---UGuuCGACGa -5'
17218 5' -54.8 NC_004333.2 + 4925 0.7 0.461955
Target:  5'- -gCGGCAUCGGcACGGCGCGcGC-GUa -3'
miRNA:   3'- gaGCCGUAGCU-UGCCGUGUuCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 28962 0.69 0.469122
Target:  5'- -cCGGCcugcgccgagcgcgAUCGcGCGGCACGAGC-GCUu -3'
miRNA:   3'- gaGCCG--------------UAGCuUGCCGUGUUCGaCGA- -5'
17218 5' -54.8 NC_004333.2 + 17768 0.69 0.482581
Target:  5'- -cCGGCGcCGcGCGGUaauuGCAAGCUGUUa -3'
miRNA:   3'- gaGCCGUaGCuUGCCG----UGUUCGACGA- -5'
17218 5' -54.8 NC_004333.2 + 45251 0.69 0.492008
Target:  5'- -cCGGCAUCGAAgcgcgcgUGGCGCcuuGGCUcGCg -3'
miRNA:   3'- gaGCCGUAGCUU-------GCCGUGu--UCGA-CGa -5'
17218 5' -54.8 NC_004333.2 + 45318 0.69 0.49306
Target:  5'- --gGGCAUCG-ACGGuUACAAGCUcGCc -3'
miRNA:   3'- gagCCGUAGCuUGCC-GUGUUCGA-CGa -5'
17218 5' -54.8 NC_004333.2 + 39888 0.69 0.497281
Target:  5'- -aCGGCAgccggguaugcgcguUCGGACGGCcacagcGCGAGCgGCg -3'
miRNA:   3'- gaGCCGU---------------AGCUUGCCG------UGUUCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 31259 0.69 0.50258
Target:  5'- gUCGGCguuGUCGAguACGGCGCGccgucugGGCgGCg -3'
miRNA:   3'- gAGCCG---UAGCU--UGCCGUGU-------UCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 6649 0.69 0.503642
Target:  5'- gCUCGGCAgcgCGcuCGGCGCGcucgAGCagGCg -3'
miRNA:   3'- -GAGCCGUa--GCuuGCCGUGU----UCGa-CGa -5'
17218 5' -54.8 NC_004333.2 + 15476 0.69 0.503642
Target:  5'- gCUUGGCGUgcCGAGC-GCAacaGGGCUGCUc -3'
miRNA:   3'- -GAGCCGUA--GCUUGcCGUg--UUCGACGA- -5'
17218 5' -54.8 NC_004333.2 + 44388 0.69 0.503642
Target:  5'- gCUCGGCGgcgCGugcGCGGUACAacGGcCUGCc -3'
miRNA:   3'- -GAGCCGUa--GCu--UGCCGUGU--UC-GACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.