miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17218 5' -54.8 NC_004333.2 + 46834 1.07 0.001138
Target:  5'- gCUCGGCAUCGAACGGCACAAGCUGCUc -3'
miRNA:   3'- -GAGCCGUAGCUUGCCGUGUUCGACGA- -5'
17218 5' -54.8 NC_004333.2 + 43376 0.77 0.166735
Target:  5'- gUCGGC-UCGAuCGGCACGAGC-GCa -3'
miRNA:   3'- gAGCCGuAGCUuGCCGUGUUCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 31095 0.76 0.181211
Target:  5'- uUCGGCgccuggcccGUC-AGCGGCGCGAGUUGCUg -3'
miRNA:   3'- gAGCCG---------UAGcUUGCCGUGUUCGACGA- -5'
17218 5' -54.8 NC_004333.2 + 13350 0.75 0.207814
Target:  5'- uUCGGCA-CGGuguacgggcGCGGCACGAGCgGCg -3'
miRNA:   3'- gAGCCGUaGCU---------UGCCGUGUUCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 15145 0.75 0.218777
Target:  5'- aCUUGGCGUCGGuugaguuGCGGCgaGCGAGCgGCa -3'
miRNA:   3'- -GAGCCGUAGCU-------UGCCG--UGUUCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 333 0.74 0.242187
Target:  5'- gCUCGGCGgcgugacgaccacaUCGAACGGCAC-GGCgugggGCg -3'
miRNA:   3'- -GAGCCGU--------------AGCUUGCCGUGuUCGa----CGa -5'
17218 5' -54.8 NC_004333.2 + 19966 0.74 0.244121
Target:  5'- -aCGGCG-CGGAUGGCccaGAGCUGCUg -3'
miRNA:   3'- gaGCCGUaGCUUGCCGug-UUCGACGA- -5'
17218 5' -54.8 NC_004333.2 + 47495 0.74 0.257346
Target:  5'- aUUGGCGccggCGAGCGGCGauguAGCUGCg -3'
miRNA:   3'- gAGCCGUa---GCUUGCCGUgu--UCGACGa -5'
17218 5' -54.8 NC_004333.2 + 13637 0.74 0.257346
Target:  5'- uUCGuGCAUCGcGCGGUACucgggcAGCUGCg -3'
miRNA:   3'- gAGC-CGUAGCuUGCCGUGu-----UCGACGa -5'
17218 5' -54.8 NC_004333.2 + 44670 0.74 0.263487
Target:  5'- -gCGGCAUCGGcacagacgucgaaGCGGCACAGGCg--- -3'
miRNA:   3'- gaGCCGUAGCU-------------UGCCGUGUUCGacga -5'
17218 5' -54.8 NC_004333.2 + 47449 0.74 0.264176
Target:  5'- gUCGGCGcuuucguuucaUCGGGCGGCGuguuGGCUGCUu -3'
miRNA:   3'- gAGCCGU-----------AGCUUGCCGUgu--UCGACGA- -5'
17218 5' -54.8 NC_004333.2 + 22276 0.73 0.278275
Target:  5'- uCUCGGCAUCGAGCaGGcCGCA-GCcGCc -3'
miRNA:   3'- -GAGCCGUAGCUUG-CC-GUGUuCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 13883 0.73 0.285547
Target:  5'- -cCGcGCgaaGUCGGcCGGCACGGGCUGCg -3'
miRNA:   3'- gaGC-CG---UAGCUuGCCGUGUUCGACGa -5'
17218 5' -54.8 NC_004333.2 + 22434 0.72 0.31613
Target:  5'- cCUCGGCG-CGuGCGGCGCAGGUuucgucgGCUu -3'
miRNA:   3'- -GAGCCGUaGCuUGCCGUGUUCGa------CGA- -5'
17218 5' -54.8 NC_004333.2 + 17380 0.72 0.332325
Target:  5'- --aGGaCGUCGAGCaGCGCAucgAGCUGCUc -3'
miRNA:   3'- gagCC-GUAGCUUGcCGUGU---UCGACGA- -5'
17218 5' -54.8 NC_004333.2 + 18467 0.72 0.332325
Target:  5'- gUUGcGCuUCGGACGGCACGAGCaugaUGCc -3'
miRNA:   3'- gAGC-CGuAGCUUGCCGUGUUCG----ACGa -5'
17218 5' -54.8 NC_004333.2 + 29122 0.72 0.340647
Target:  5'- aCUCGGCGcgaucgUGGGCGGCGCGGuGCUcGCg -3'
miRNA:   3'- -GAGCCGUa-----GCUUGCCGUGUU-CGA-CGa -5'
17218 5' -54.8 NC_004333.2 + 9609 0.72 0.340647
Target:  5'- -gCGGCAUCGGcCGGUugcGCAccGGCUGCc -3'
miRNA:   3'- gaGCCGUAGCUuGCCG---UGU--UCGACGa -5'
17218 5' -54.8 NC_004333.2 + 38646 0.72 0.340647
Target:  5'- aUCGGCc-CGGGCGGCACGGGCa--- -3'
miRNA:   3'- gAGCCGuaGCUUGCCGUGUUCGacga -5'
17218 5' -54.8 NC_004333.2 + 2765 0.72 0.34912
Target:  5'- aUCGGCcuGUCGGccgccgcCGGCGCGAcGCUGCa -3'
miRNA:   3'- gAGCCG--UAGCUu------GCCGUGUU-CGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.