miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17218 5' -54.8 NC_004333.2 + 46834 1.07 0.001138
Target:  5'- gCUCGGCAUCGAACGGCACAAGCUGCUc -3'
miRNA:   3'- -GAGCCGUAGCUUGCCGUGUUCGACGA- -5'
17218 5' -54.8 NC_004333.2 + 45318 0.69 0.49306
Target:  5'- --gGGCAUCG-ACGGuUACAAGCUcGCc -3'
miRNA:   3'- gagCCGUAGCuUGCC-GUGUUCGA-CGa -5'
17218 5' -54.8 NC_004333.2 + 44388 0.69 0.503642
Target:  5'- gCUCGGCGgcgCGugcGCGGUACAacGGcCUGCc -3'
miRNA:   3'- -GAGCCGUa--GCu--UGCCGUGU--UC-GACGa -5'
17218 5' -54.8 NC_004333.2 + 47970 0.66 0.680994
Target:  5'- gUCGGCGUCaucGGCGGUguGC-GGCUGUg -3'
miRNA:   3'- gAGCCGUAGc--UUGCCG--UGuUCGACGa -5'
17218 5' -54.8 NC_004333.2 + 13637 0.74 0.257346
Target:  5'- uUCGuGCAUCGcGCGGUACucgggcAGCUGCg -3'
miRNA:   3'- gAGC-CGUAGCuUGCCGUGu-----UCGACGa -5'
17218 5' -54.8 NC_004333.2 + 44670 0.74 0.263487
Target:  5'- -gCGGCAUCGGcacagacgucgaaGCGGCACAGGCg--- -3'
miRNA:   3'- gaGCCGUAGCU-------------UGCCGUGUUCGacga -5'
17218 5' -54.8 NC_004333.2 + 17380 0.72 0.332325
Target:  5'- --aGGaCGUCGAGCaGCGCAucgAGCUGCUc -3'
miRNA:   3'- gagCC-GUAGCUUGcCGUGU---UCGACGA- -5'
17218 5' -54.8 NC_004333.2 + 9609 0.72 0.340647
Target:  5'- -gCGGCAUCGGcCGGUugcGCAccGGCUGCc -3'
miRNA:   3'- gaGCCGUAGCUuGCCG---UGU--UCGACGa -5'
17218 5' -54.8 NC_004333.2 + 41704 0.71 0.403044
Target:  5'- -gCGGCAacuUCGGGCGGCAC-GGC-GCg -3'
miRNA:   3'- gaGCCGU---AGCUUGCCGUGuUCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 45251 0.69 0.492008
Target:  5'- -cCGGCAUCGAAgcgcgcgUGGCGCcuuGGCUcGCg -3'
miRNA:   3'- gaGCCGUAGCUU-------GCCGUGu--UCGA-CGa -5'
17218 5' -54.8 NC_004333.2 + 41636 0.7 0.441801
Target:  5'- -gCGGCAgaUUGucgGGCGCGGGCUGCg -3'
miRNA:   3'- gaGCCGU--AGCuugCCGUGUUCGACGa -5'
17218 5' -54.8 NC_004333.2 + 45998 0.71 0.375428
Target:  5'- aCUCGGCGcCGAGggcUGGCACGGcCUGCg -3'
miRNA:   3'- -GAGCCGUaGCUU---GCCGUGUUcGACGa -5'
17218 5' -54.8 NC_004333.2 + 31095 0.76 0.181211
Target:  5'- uUCGGCgccuggcccGUC-AGCGGCGCGAGUUGCUg -3'
miRNA:   3'- gAGCCG---------UAGcUUGCCGUGUUCGACGA- -5'
17218 5' -54.8 NC_004333.2 + 13957 0.7 0.441801
Target:  5'- cCUUGGCGacuUCaGGCGGCggccggugcgcGCGAGCUGCg -3'
miRNA:   3'- -GAGCCGU---AGcUUGCCG-----------UGUUCGACGa -5'
17218 5' -54.8 NC_004333.2 + 13350 0.75 0.207814
Target:  5'- uUCGGCA-CGGuguacgggcGCGGCACGAGCgGCg -3'
miRNA:   3'- gAGCCGUaGCU---------UGCCGUGUUCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 38646 0.72 0.340647
Target:  5'- aUCGGCc-CGGGCGGCACGGGCa--- -3'
miRNA:   3'- gAGCCGuaGCUUGCCGUGUUCGacga -5'
17218 5' -54.8 NC_004333.2 + 17768 0.69 0.482581
Target:  5'- -cCGGCGcCGcGCGGUaauuGCAAGCUGUUa -3'
miRNA:   3'- gaGCCGUaGCuUGCCG----UGUUCGACGA- -5'
17218 5' -54.8 NC_004333.2 + 6649 0.69 0.503642
Target:  5'- gCUCGGCAgcgCGcuCGGCGCGcucgAGCagGCg -3'
miRNA:   3'- -GAGCCGUa--GCuuGCCGUGU----UCGa-CGa -5'
17218 5' -54.8 NC_004333.2 + 15145 0.75 0.218777
Target:  5'- aCUUGGCGUCGGuugaguuGCGGCgaGCGAGCgGCa -3'
miRNA:   3'- -GAGCCGUAGCU-------UGCCG--UGUUCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 13883 0.73 0.285547
Target:  5'- -cCGcGCgaaGUCGGcCGGCACGGGCUGCg -3'
miRNA:   3'- gaGC-CG---UAGCUuGCCGUGUUCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.