miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17218 5' -54.8 NC_004333.2 + 333 0.74 0.242187
Target:  5'- gCUCGGCGgcgugacgaccacaUCGAACGGCAC-GGCgugggGCg -3'
miRNA:   3'- -GAGCCGU--------------AGCUUGCCGUGuUCGa----CGa -5'
17218 5' -54.8 NC_004333.2 + 1476 0.66 0.703172
Target:  5'- gUCGGCAagCGGuAUGaGUACAAGCgcgGCUu -3'
miRNA:   3'- gAGCCGUa-GCU-UGC-CGUGUUCGa--CGA- -5'
17218 5' -54.8 NC_004333.2 + 1644 0.7 0.412531
Target:  5'- aUgGGCAUCG-ACGGCACGuugucGGCcgGCUu -3'
miRNA:   3'- gAgCCGUAGCuUGCCGUGU-----UCGa-CGA- -5'
17218 5' -54.8 NC_004333.2 + 2765 0.72 0.34912
Target:  5'- aUCGGCcuGUCGGccgccgcCGGCGCGAcGCUGCa -3'
miRNA:   3'- gAGCCG--UAGCUu------GCCGUGUU-CGACGa -5'
17218 5' -54.8 NC_004333.2 + 2995 0.66 0.680994
Target:  5'- -gCGGCA-CGuuGACGGuCACGAccGCUGCg -3'
miRNA:   3'- gaGCCGUaGC--UUGCC-GUGUU--CGACGa -5'
17218 5' -54.8 NC_004333.2 + 3123 0.7 0.412531
Target:  5'- --gGGCAUCGucAACGGCGgCcAGCUGCc -3'
miRNA:   3'- gagCCGUAGC--UUGCCGU-GuUCGACGa -5'
17218 5' -54.8 NC_004333.2 + 3284 0.68 0.557883
Target:  5'- aUCGGgG-CGGGCGGCGCGccgGGCcgGCUc -3'
miRNA:   3'- gAGCCgUaGCUUGCCGUGU---UCGa-CGA- -5'
17218 5' -54.8 NC_004333.2 + 4925 0.7 0.461955
Target:  5'- -gCGGCAUCGGcACGGCGCGcGC-GUa -3'
miRNA:   3'- gaGCCGUAGCU-UGCCGUGUuCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 5701 0.66 0.692114
Target:  5'- -aCGGCAUgGuGCGcGUugccuGCAAGCUGCc -3'
miRNA:   3'- gaGCCGUAgCuUGC-CG-----UGUUCGACGa -5'
17218 5' -54.8 NC_004333.2 + 6649 0.69 0.503642
Target:  5'- gCUCGGCAgcgCGcuCGGCGCGcucgAGCagGCg -3'
miRNA:   3'- -GAGCCGUa--GCuuGCCGUGU----UCGa-CGa -5'
17218 5' -54.8 NC_004333.2 + 6670 0.68 0.535948
Target:  5'- -gCGGCGcUGGGCGGCGCGccguGGCgGCg -3'
miRNA:   3'- gaGCCGUaGCUUGCCGUGU----UCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 9121 0.67 0.613653
Target:  5'- aUCGGCGUCG-ACGuGuCGCAGGUcGCc -3'
miRNA:   3'- gAGCCGUAGCuUGC-C-GUGUUCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 9609 0.72 0.340647
Target:  5'- -gCGGCAUCGGcCGGUugcGCAccGGCUGCc -3'
miRNA:   3'- gaGCCGUAGCUuGCCG---UGU--UCGACGa -5'
17218 5' -54.8 NC_004333.2 + 11923 0.7 0.461955
Target:  5'- -cCGGCAgacggaagCGAuguacCGGCGCAAGCUGg- -3'
miRNA:   3'- gaGCCGUa-------GCUu----GCCGUGUUCGACga -5'
17218 5' -54.8 NC_004333.2 + 12114 0.66 0.658621
Target:  5'- gUCGaacuuacCGAGCGGCACGAGCUcGCc -3'
miRNA:   3'- gAGCcgua---GCUUGCCGUGUUCGA-CGa -5'
17218 5' -54.8 NC_004333.2 + 13350 0.75 0.207814
Target:  5'- uUCGGCA-CGGuguacgggcGCGGCACGAGCgGCg -3'
miRNA:   3'- gAGCCGUaGCU---------UGCCGUGUUCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 13598 0.66 0.666468
Target:  5'- -gCGGCAacgccgcgagcacgUCGGACGGCgACcAGCUGa- -3'
miRNA:   3'- gaGCCGU--------------AGCUUGCCG-UGuUCGACga -5'
17218 5' -54.8 NC_004333.2 + 13637 0.74 0.257346
Target:  5'- uUCGuGCAUCGcGCGGUACucgggcAGCUGCg -3'
miRNA:   3'- gAGC-CGUAGCuUGCCGUGu-----UCGACGa -5'
17218 5' -54.8 NC_004333.2 + 13883 0.73 0.285547
Target:  5'- -cCGcGCgaaGUCGGcCGGCACGGGCUGCg -3'
miRNA:   3'- gaGC-CG---UAGCUuGCCGUGUUCGACGa -5'
17218 5' -54.8 NC_004333.2 + 13957 0.7 0.441801
Target:  5'- cCUUGGCGacuUCaGGCGGCggccggugcgcGCGAGCUGCg -3'
miRNA:   3'- -GAGCCGU---AGcUUGCCG-----------UGUUCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.