miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17278 5' -48.9 NC_004367.1 + 19389 0.66 0.998902
Target:  5'- gGAUAUCAAGGuguaUCCACUgggguGCUGC-CGUu -3'
miRNA:   3'- aCUGUAGUUCU----AGGUGA-----UGGUGuGCG- -5'
17278 5' -48.9 NC_004367.1 + 61644 0.66 0.998902
Target:  5'- gGACAUCAAGAggUCCuuuucagaACUggACU-CACGCu -3'
miRNA:   3'- aCUGUAGUUCU--AGG--------UGA--UGGuGUGCG- -5'
17278 5' -48.9 NC_004367.1 + 78632 0.66 0.998637
Target:  5'- gGGgGUUGAGGccuuguuUUCACUACUAUugGCa -3'
miRNA:   3'- aCUgUAGUUCU-------AGGUGAUGGUGugCG- -5'
17278 5' -48.9 NC_004367.1 + 12703 0.66 0.998383
Target:  5'- aGACAUUAgGGGUCCAgaGCCGCcccUGUg -3'
miRNA:   3'- aCUGUAGU-UCUAGGUgaUGGUGu--GCG- -5'
17278 5' -48.9 NC_004367.1 + 111809 0.66 0.998352
Target:  5'- gGACAUCcAGAugccaagUCCGCccuggACCgccuaaaaGCACGCa -3'
miRNA:   3'- aCUGUAGuUCU-------AGGUGa----UGG--------UGUGCG- -5'
17278 5' -48.9 NC_004367.1 + 6974 0.66 0.998054
Target:  5'- uUGAC-UCGGGAUCCG--GgCACACGa -3'
miRNA:   3'- -ACUGuAGUUCUAGGUgaUgGUGUGCg -5'
17278 5' -48.9 NC_004367.1 + 6319 0.66 0.998054
Target:  5'- gGAUAUaAGGAUCUuauaaagagcuGCUACCACAuuuUGCa -3'
miRNA:   3'- aCUGUAgUUCUAGG-----------UGAUGGUGU---GCG- -5'
17278 5' -48.9 NC_004367.1 + 96836 0.67 0.99767
Target:  5'- gUGAag-CGAGGUCCAUuUACCuACAgGCu -3'
miRNA:   3'- -ACUguaGUUCUAGGUG-AUGG-UGUgCG- -5'
17278 5' -48.9 NC_004367.1 + 56824 0.67 0.995378
Target:  5'- gGGCGUCcAGAacgCCGCUgaACCcgggcagGCGCGCu -3'
miRNA:   3'- aCUGUAGuUCUa--GGUGA--UGG-------UGUGCG- -5'
17278 5' -48.9 NC_004367.1 + 116519 0.67 0.995378
Target:  5'- gGGCGUCcAGAacgCCGCUgaACCcgggcagGCGCGCu -3'
miRNA:   3'- aCUGUAGuUCUa--GGUGA--UGG-------UGUGCG- -5'
17278 5' -48.9 NC_004367.1 + 105440 0.68 0.994685
Target:  5'- -cGCAguaaAGGAguggaGCUGCCACGCGCa -3'
miRNA:   3'- acUGUag--UUCUagg--UGAUGGUGUGCG- -5'
17278 5' -48.9 NC_004367.1 + 43874 0.68 0.992843
Target:  5'- aGACAcCGGGcUCCACgauCgGCACGUa -3'
miRNA:   3'- aCUGUaGUUCuAGGUGau-GgUGUGCG- -5'
17278 5' -48.9 NC_004367.1 + 23462 0.68 0.991631
Target:  5'- gGGCGUCcAGAacgCCACUgaACCcgggcagGCGCGCu -3'
miRNA:   3'- aCUGUAGuUCUa--GGUGA--UGG-------UGUGCG- -5'
17278 5' -48.9 NC_004367.1 + 119474 0.68 0.990524
Target:  5'- cUGACAUCAuaacuugauaguGGGggCG-UACCACACGCc -3'
miRNA:   3'- -ACUGUAGU------------UCUagGUgAUGGUGUGCG- -5'
17278 5' -48.9 NC_004367.1 + 53761 0.69 0.989162
Target:  5'- gUGGCcaGUCAAaGUCCGCauucACCACGCGg -3'
miRNA:   3'- -ACUG--UAGUUcUAGGUGa---UGGUGUGCg -5'
17278 5' -48.9 NC_004367.1 + 58774 0.69 0.985985
Target:  5'- aUGGCggCAAGcaccacAUCgGCUACCAuCACGUa -3'
miRNA:   3'- -ACUGuaGUUC------UAGgUGAUGGU-GUGCG- -5'
17278 5' -48.9 NC_004367.1 + 51334 0.69 0.984151
Target:  5'- gGACAUCccucauuccggAAGAcCCACUGCCGuggauCugGCu -3'
miRNA:   3'- aCUGUAG-----------UUCUaGGUGAUGGU-----GugCG- -5'
17278 5' -48.9 NC_004367.1 + 3839 0.69 0.98214
Target:  5'- gGGCAggauuaAAGGUCCA-UACCACGgGCu -3'
miRNA:   3'- aCUGUag----UUCUAGGUgAUGGUGUgCG- -5'
17278 5' -48.9 NC_004367.1 + 37833 0.7 0.977551
Target:  5'- gUGACAUCGGucgccUCCAaacuCCGCACGCc -3'
miRNA:   3'- -ACUGUAGUUcu---AGGUgau-GGUGUGCG- -5'
17278 5' -48.9 NC_004367.1 + 84203 0.7 0.969118
Target:  5'- aUGGCAUCcGGAUUCAcCUGCUGCGgGUu -3'
miRNA:   3'- -ACUGUAGuUCUAGGU-GAUGGUGUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.