miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17284 5' -54.4 NC_004367.1 + 46510 0.67 0.883399
Target:  5'- gUGCCGcAUCUAAGuCCCACGUGGCauuCAACa -3'
miRNA:   3'- -AUGGU-UGGGUUU-GGGUGCGUCG---GUUG- -5'
17284 5' -54.4 NC_004367.1 + 133596 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaaggguccucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 133204 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaaggguccucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 133508 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaagggucgucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 133420 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaagcguccucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 39533 0.67 0.876098
Target:  5'- cACCAGCCCAuACCCucaACGCccUUAACa -3'
miRNA:   3'- aUGGUUGGGUuUGGG---UGCGucGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 121102 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 121059 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 123968 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 126877 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 129786 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 126920 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 97670 0.68 0.860807
Target:  5'- aUAUCAuCCCAauAACCCGugcUGCAGCCGc- -3'
miRNA:   3'- -AUGGUuGGGU--UUGGGU---GCGUCGGUug -5'
17284 5' -54.4 NC_004367.1 + 129829 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 124011 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 6602 0.68 0.852829
Target:  5'- -uCC-ACCCAGaACCCACGagugacguGGCCGACc -3'
miRNA:   3'- auGGuUGGGUU-UGGGUGCg-------UCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 92956 0.68 0.84464
Target:  5'- cACCGACCCuucauCCCGCGC-GUUAAa -3'
miRNA:   3'- aUGGUUGGGuuu--GGGUGCGuCGGUUg -5'
17284 5' -54.4 NC_004367.1 + 19732 0.69 0.818872
Target:  5'- -uUCAACUCAgcGACCUACGgCAGCCGu- -3'
miRNA:   3'- auGGUUGGGU--UUGGGUGC-GUCGGUug -5'
17284 5' -54.4 NC_004367.1 + 55484 0.69 0.782038
Target:  5'- -uCCcACCCgAAACCC-CGCAGCCu-- -3'
miRNA:   3'- auGGuUGGG-UUUGGGuGCGUCGGuug -5'
17284 5' -54.4 NC_004367.1 + 41810 0.69 0.782038
Target:  5'- gACCAuucgcGCCCAGACCCGgccuaugaguucCGCAGCa--- -3'
miRNA:   3'- aUGGU-----UGGGUUUGGGU------------GCGUCGguug -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.