Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17284 | 5' | -54.4 | NC_004367.1 | + | 46510 | 0.67 | 0.883399 |
Target: 5'- gUGCCGcAUCUAAGuCCCACGUGGCauuCAACa -3' miRNA: 3'- -AUGGU-UGGGUUU-GGGUGCGUCG---GUUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 133204 | 0.67 | 0.879047 |
Target: 5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaaggguccucGCCAACa -3' miRNA: 3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 133420 | 0.67 | 0.879047 |
Target: 5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaagcguccucGCCAACa -3' miRNA: 3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 133508 | 0.67 | 0.879047 |
Target: 5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaagggucgucGCCAACa -3' miRNA: 3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 133596 | 0.67 | 0.879047 |
Target: 5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaaggguccucGCCAACa -3' miRNA: 3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 39533 | 0.67 | 0.876098 |
Target: 5'- cACCAGCCCAuACCCucaACGCccUUAACa -3' miRNA: 3'- aUGGUUGGGUuUGGG---UGCGucGGUUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 129786 | 0.68 | 0.860807 |
Target: 5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3' miRNA: 3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 121102 | 0.68 | 0.860807 |
Target: 5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3' miRNA: 3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 124011 | 0.68 | 0.860807 |
Target: 5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3' miRNA: 3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 126920 | 0.68 | 0.860807 |
Target: 5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3' miRNA: 3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 129829 | 0.68 | 0.860807 |
Target: 5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3' miRNA: 3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 97670 | 0.68 | 0.860807 |
Target: 5'- aUAUCAuCCCAauAACCCGugcUGCAGCCGc- -3' miRNA: 3'- -AUGGUuGGGU--UUGGGU---GCGUCGGUug -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 126877 | 0.68 | 0.860807 |
Target: 5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3' miRNA: 3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 123968 | 0.68 | 0.860807 |
Target: 5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3' miRNA: 3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 121059 | 0.68 | 0.860807 |
Target: 5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3' miRNA: 3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 6602 | 0.68 | 0.852829 |
Target: 5'- -uCC-ACCCAGaACCCACGagugacguGGCCGACc -3' miRNA: 3'- auGGuUGGGUU-UGGGUGCg-------UCGGUUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 92956 | 0.68 | 0.84464 |
Target: 5'- cACCGACCCuucauCCCGCGC-GUUAAa -3' miRNA: 3'- aUGGUUGGGuuu--GGGUGCGuCGGUUg -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 19732 | 0.69 | 0.818872 |
Target: 5'- -uUCAACUCAgcGACCUACGgCAGCCGu- -3' miRNA: 3'- auGGUUGGGU--UUGGGUGC-GUCGGUug -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 41810 | 0.69 | 0.782038 |
Target: 5'- gACCAuucgcGCCCAGACCCGgccuaugaguucCGCAGCa--- -3' miRNA: 3'- aUGGU-----UGGGUUUGGGU------------GCGUCGguug -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 55484 | 0.69 | 0.782038 |
Target: 5'- -uCCcACCCgAAACCC-CGCAGCCu-- -3' miRNA: 3'- auGGuUGGG-UUUGGGuGCGUCGGuug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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