Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17284 | 5' | -54.4 | NC_004367.1 | + | 96852 | 0.66 | 0.932996 |
Target: 5'- uUACCuacaGGCUgAAGCUCugGCAGCUgagGACa -3' miRNA: 3'- -AUGG----UUGGgUUUGGGugCGUCGG---UUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 97670 | 0.68 | 0.860807 |
Target: 5'- aUAUCAuCCCAauAACCCGugcUGCAGCCGc- -3' miRNA: 3'- -AUGGUuGGGU--UUGGGU---GCGUCGGUug -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 100692 | 0.66 | 0.927676 |
Target: 5'- gGCCGAUagauGCCCGCGUAGCUcuGCu -3' miRNA: 3'- aUGGUUGgguuUGGGUGCGUCGGu-UG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 103470 | 0.67 | 0.890464 |
Target: 5'- gACCAGCCUGGuggguggauuuAgCCACGgCAGCCAc- -3' miRNA: 3'- aUGGUUGGGUU-----------UgGGUGC-GUCGGUug -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 104670 | 0.7 | 0.742921 |
Target: 5'- gGCCGACCCuccACCCuACGCAcaCAGCa -3' miRNA: 3'- aUGGUUGGGuu-UGGG-UGCGUcgGUUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 106080 | 0.66 | 0.916276 |
Target: 5'- aGCCc-CCCGAACU---GCAGCCGGCa -3' miRNA: 3'- aUGGuuGGGUUUGGgugCGUCGGUUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 108996 | 0.71 | 0.681362 |
Target: 5'- uUGCCAACCagugggugGAGCgCGCGCagacAGCCAACg -3' miRNA: 3'- -AUGGUUGGg-------UUUGgGUGCG----UCGGUUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 120188 | 0.74 | 0.514671 |
Target: 5'- cUACCGuGCCCuAACCCA-GUAGCCGGCc -3' miRNA: 3'- -AUGGU-UGGGuUUGGGUgCGUCGGUUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 121010 | 0.67 | 0.890464 |
Target: 5'- gGCCAACUaGAugUCgGgGCAGCCAGCc -3' miRNA: 3'- aUGGUUGGgUUugGG-UgCGUCGGUUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 121059 | 0.68 | 0.860807 |
Target: 5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3' miRNA: 3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 121102 | 0.68 | 0.860807 |
Target: 5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3' miRNA: 3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 121430 | 0.67 | 0.890464 |
Target: 5'- -uUgGGCCCAGG-CCGCGCcuGCCAGCc -3' miRNA: 3'- auGgUUGGGUUUgGGUGCGu-CGGUUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 121971 | 0.66 | 0.910197 |
Target: 5'- cUGCUAcCCCAAGCCCAgaCAGCUAc- -3' miRNA: 3'- -AUGGUuGGGUUUGGGUgcGUCGGUug -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 123097 | 0.74 | 0.514671 |
Target: 5'- cUACCGuGCCCuAACCCA-GUAGCCGGCc -3' miRNA: 3'- -AUGGU-UGGGuUUGGGUgCGUCGGUUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 123919 | 0.67 | 0.890464 |
Target: 5'- gGCCAACUaGAugUCgGgGCAGCCAGCc -3' miRNA: 3'- aUGGUUGGgUUugGG-UgCGUCGGUUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 123968 | 0.68 | 0.860807 |
Target: 5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3' miRNA: 3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 124011 | 0.68 | 0.860807 |
Target: 5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3' miRNA: 3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 124339 | 0.67 | 0.890464 |
Target: 5'- -uUgGGCCCAGG-CCGCGCcuGCCAGCc -3' miRNA: 3'- auGgUUGGGUUUgGGUGCGu-CGGUUG- -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 124880 | 0.66 | 0.910197 |
Target: 5'- cUGCUAcCCCAAGCCCAgaCAGCUAc- -3' miRNA: 3'- -AUGGUuGGGUUUGGGUgcGUCGGUug -5' |
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17284 | 5' | -54.4 | NC_004367.1 | + | 126006 | 0.74 | 0.514671 |
Target: 5'- cUACCGuGCCCuAACCCA-GUAGCCGGCc -3' miRNA: 3'- -AUGGU-UGGGuUUGGGUgCGUCGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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