miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17284 5' -54.4 NC_004367.1 + 126828 0.67 0.890464
Target:  5'- gGCCAACUaGAugUCgGgGCAGCCAGCc -3'
miRNA:   3'- aUGGUUGGgUUugGG-UgCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 126877 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 126920 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 127248 0.67 0.890464
Target:  5'- -uUgGGCCCAGG-CCGCGCcuGCCAGCc -3'
miRNA:   3'- auGgUUGGGUUUgGGUGCGu-CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 127789 0.66 0.910197
Target:  5'- cUGCUAcCCCAAGCCCAgaCAGCUAc- -3'
miRNA:   3'- -AUGGUuGGGUUUGGGUgcGUCGGUug -5'
17284 5' -54.4 NC_004367.1 + 128915 0.74 0.514671
Target:  5'- cUACCGuGCCCuAACCCA-GUAGCCGGCc -3'
miRNA:   3'- -AUGGU-UGGGuUUGGGUgCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 129786 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 129829 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 130157 0.67 0.890464
Target:  5'- -uUgGGCCCAGG-CCGCGCcuGCCAGCc -3'
miRNA:   3'- auGgUUGGGUUUgGGUGCGu-CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 133204 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaaggguccucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 133420 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaagcguccucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 133508 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaagggucgucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 133596 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaaggguccucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 135488 0.74 0.524768
Target:  5'- cACCcACCCAGAUCCuCGCuGCCGAg -3'
miRNA:   3'- aUGGuUGGGUUUGGGuGCGuCGGUUg -5'
17284 5' -54.4 NC_004367.1 + 135953 0.7 0.772448
Target:  5'- gACCGugCCGccCCCuCGCAggGCCGGCg -3'
miRNA:   3'- aUGGUugGGUuuGGGuGCGU--CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 137518 0.7 0.73286
Target:  5'- aUACCAACCCAAGCaaauugCC-CGCGGCUc-- -3'
miRNA:   3'- -AUGGUUGGGUUUG------GGuGCGUCGGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.