miRNA display CGI


Results 41 - 56 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17284 5' -54.4 NC_004367.1 + 133420 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaagcguccucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 133508 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaagggucgucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 133596 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaaggguccucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 81616 1.08 0.00391
Target:  5'- cUACCAACCCAAACCCACGCAGCCAACu -3'
miRNA:   3'- -AUGGUUGGGUUUGGGUGCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 26182 0.73 0.576254
Target:  5'- aGCCAACCCGGACCUuacaAUGUccAGCCAu- -3'
miRNA:   3'- aUGGUUGGGUUUGGG----UGCG--UCGGUug -5'
17284 5' -54.4 NC_004367.1 + 69571 0.71 0.712469
Target:  5'- cGCC-GCgCAuuGGCCCuuGCGGCCAACg -3'
miRNA:   3'- aUGGuUGgGU--UUGGGugCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 72352 0.7 0.73286
Target:  5'- aACCcACCCAGACCgG-GCAGCCu-- -3'
miRNA:   3'- aUGGuUGGGUUUGGgUgCGUCGGuug -5'
17284 5' -54.4 NC_004367.1 + 27297 0.7 0.746918
Target:  5'- cUACCAGCCCuguCUUugGCuucccuacaucccgaGGCCAGCa -3'
miRNA:   3'- -AUGGUUGGGuuuGGGugCG---------------UCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 92956 0.68 0.84464
Target:  5'- cACCGACCCuucauCCCGCGC-GUUAAa -3'
miRNA:   3'- aUGGUUGGGuuu--GGGUGCGuCGGUUg -5'
17284 5' -54.4 NC_004367.1 + 55484 0.69 0.782038
Target:  5'- -uCCcACCCgAAACCC-CGCAGCCu-- -3'
miRNA:   3'- auGGuUGGG-UUUGGGuGCGUCGGuug -5'
17284 5' -54.4 NC_004367.1 + 7898 0.7 0.75288
Target:  5'- -uCCAcUCCAcGCCCGCGgCGGCCAGu -3'
miRNA:   3'- auGGUuGGGUuUGGGUGC-GUCGGUUg -5'
17284 5' -54.4 NC_004367.1 + 129786 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 126877 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 123968 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 121059 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 100692 0.66 0.927676
Target:  5'- gGCCGAUagauGCCCGCGUAGCUcuGCu -3'
miRNA:   3'- aUGGUUGgguuUGGGUGCGUCGGu-UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.