miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17284 5' -54.4 NC_004367.1 + 129829 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 74829 0.67 0.896617
Target:  5'- aGCCGugCCAcAGCCgACggaaacuGCAGCCAGu -3'
miRNA:   3'- aUGGUugGGU-UUGGgUG-------CGUCGGUUg -5'
17284 5' -54.4 NC_004367.1 + 41919 0.66 0.932996
Target:  5'- gGCgGugCCGGGCCUACaCAGCCccuGCc -3'
miRNA:   3'- aUGgUugGGUUUGGGUGcGUCGGu--UG- -5'
17284 5' -54.4 NC_004367.1 + 97670 0.68 0.860807
Target:  5'- aUAUCAuCCCAauAACCCGugcUGCAGCCGc- -3'
miRNA:   3'- -AUGGUuGGGU--UUGGGU---GCGUCGGUug -5'
17284 5' -54.4 NC_004367.1 + 121010 0.67 0.890464
Target:  5'- gGCCAACUaGAugUCgGgGCAGCCAGCc -3'
miRNA:   3'- aUGGUUGGgUUugGG-UgCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 18085 0.67 0.903867
Target:  5'- aAgCAACCCAAACagcuaACGguGCCAc- -3'
miRNA:   3'- aUgGUUGGGUUUGgg---UGCguCGGUug -5'
17284 5' -54.4 NC_004367.1 + 124011 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 39533 0.67 0.876098
Target:  5'- cACCAGCCCAuACCCucaACGCccUUAACa -3'
miRNA:   3'- aUGGUUGGGUuUGGG---UGCGucGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 81616 1.08 0.00391
Target:  5'- cUACCAACCCAAACCCACGCAGCCAACu -3'
miRNA:   3'- -AUGGUUGGGUUUGGGUGCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 38443 0.66 0.910197
Target:  5'- aGCgGAUaCCAGAcuCCCGCGCGuccuuGCCGACa -3'
miRNA:   3'- aUGgUUG-GGUUU--GGGUGCGU-----CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 133596 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaaggguccucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 133508 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaagggucgucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 27297 0.7 0.746918
Target:  5'- cUACCAGCCCuguCUUugGCuucccuacaucccgaGGCCAGCa -3'
miRNA:   3'- -AUGGUUGGGuuuGGGugCG---------------UCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 121430 0.67 0.890464
Target:  5'- -uUgGGCCCAGG-CCGCGCcuGCCAGCc -3'
miRNA:   3'- auGgUUGGGUUUgGGUGCGu-CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 72352 0.7 0.73286
Target:  5'- aACCcACCCAGACCgG-GCAGCCu-- -3'
miRNA:   3'- aUGGuUGGGUUUGGgUgCGUCGGuug -5'
17284 5' -54.4 NC_004367.1 + 69571 0.71 0.712469
Target:  5'- cGCC-GCgCAuuGGCCCuuGCGGCCAACg -3'
miRNA:   3'- aUGGuUGgGU--UUGGGugCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 26182 0.73 0.576254
Target:  5'- aGCCAACCCGGACCUuacaAUGUccAGCCAu- -3'
miRNA:   3'- aUGGUUGGGUUUGGG----UGCG--UCGGUug -5'
17284 5' -54.4 NC_004367.1 + 127789 0.66 0.910197
Target:  5'- cUGCUAcCCCAAGCCCAgaCAGCUAc- -3'
miRNA:   3'- -AUGGUuGGGUUUGGGUgcGUCGGUug -5'
17284 5' -54.4 NC_004367.1 + 135488 0.74 0.524768
Target:  5'- cACCcACCCAGAUCCuCGCuGCCGAg -3'
miRNA:   3'- aUGGuUGGGUUUGGGuGCGuCGGUUg -5'
17284 5' -54.4 NC_004367.1 + 133420 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaagcguccucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.