miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17284 5' -54.4 NC_004367.1 + 127789 0.66 0.910197
Target:  5'- cUGCUAcCCCAAGCCCAgaCAGCUAc- -3'
miRNA:   3'- -AUGGUuGGGUUUGGGUgcGUCGGUug -5'
17284 5' -54.4 NC_004367.1 + 121430 0.67 0.890464
Target:  5'- -uUgGGCCCAGG-CCGCGCcuGCCAGCc -3'
miRNA:   3'- auGgUUGGGUUUgGGUGCGu-CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 124339 0.67 0.890464
Target:  5'- -uUgGGCCCAGG-CCGCGCcuGCCAGCc -3'
miRNA:   3'- auGgUUGGGUUUgGGUGCGu-CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 127248 0.67 0.890464
Target:  5'- -uUgGGCCCAGG-CCGCGCcuGCCAGCc -3'
miRNA:   3'- auGgUUGGGUUUgGGUGCGu-CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 130157 0.67 0.890464
Target:  5'- -uUgGGCCCAGG-CCGCGCcuGCCAGCc -3'
miRNA:   3'- auGgUUGGGUUUgGGUGCGu-CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 46510 0.67 0.883399
Target:  5'- gUGCCGcAUCUAAGuCCCACGUGGCauuCAACa -3'
miRNA:   3'- -AUGGU-UGGGUUU-GGGUGCGUCG---GUUG- -5'
17284 5' -54.4 NC_004367.1 + 133204 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaaggguccucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 133420 0.67 0.879047
Target:  5'- cGCCAacaaacguuGCCCAAcACCCagucACGCAgucucaagcguccucGCCAACa -3'
miRNA:   3'- aUGGU---------UGGGUU-UGGG----UGCGU---------------CGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 126920 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 129829 0.68 0.860807
Target:  5'- -uCCAGCCCcuGGCCCGgagGCGGCCcGCc -3'
miRNA:   3'- auGGUUGGGu-UUGGGUg--CGUCGGuUG- -5'
17284 5' -54.4 NC_004367.1 + 97670 0.68 0.860807
Target:  5'- aUAUCAuCCCAauAACCCGugcUGCAGCCGc- -3'
miRNA:   3'- -AUGGUuGGGU--UUGGGU---GCGUCGGUug -5'
17284 5' -54.4 NC_004367.1 + 39533 0.67 0.876098
Target:  5'- cACCAGCCCAuACCCucaACGCccUUAACa -3'
miRNA:   3'- aUGGUUGGGUuUGGG---UGCGucGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 103470 0.67 0.890464
Target:  5'- gACCAGCCUGGuggguggauuuAgCCACGgCAGCCAc- -3'
miRNA:   3'- aUGGUUGGGUU-----------UgGGUGC-GUCGGUug -5'
17284 5' -54.4 NC_004367.1 + 121010 0.67 0.890464
Target:  5'- gGCCAACUaGAugUCgGgGCAGCCAGCc -3'
miRNA:   3'- aUGGUUGGgUUugGG-UgCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 123919 0.67 0.890464
Target:  5'- gGCCAACUaGAugUCgGgGCAGCCAGCc -3'
miRNA:   3'- aUGGUUGGgUUugGG-UgCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 126828 0.67 0.890464
Target:  5'- gGCCAACUaGAugUCgGgGCAGCCAGCc -3'
miRNA:   3'- aUGGUUGGgUUugGG-UgCGUCGGUUG- -5'
17284 5' -54.4 NC_004367.1 + 74829 0.67 0.896617
Target:  5'- aGCCGugCCAcAGCCgACggaaacuGCAGCCAGu -3'
miRNA:   3'- aUGGUugGGU-UUGGgUG-------CGUCGGUUg -5'
17284 5' -54.4 NC_004367.1 + 18085 0.67 0.903867
Target:  5'- aAgCAACCCAAACagcuaACGguGCCAc- -3'
miRNA:   3'- aUgGUUGGGUUUGgg---UGCguCGGUug -5'
17284 5' -54.4 NC_004367.1 + 39213 0.66 0.916276
Target:  5'- cGCCAAUCU---CCCACGCGuGCCucuAACa -3'
miRNA:   3'- aUGGUUGGGuuuGGGUGCGU-CGG---UUG- -5'
17284 5' -54.4 NC_004367.1 + 106080 0.66 0.916276
Target:  5'- aGCCc-CCCGAACU---GCAGCCGGCa -3'
miRNA:   3'- aUGGuuGGGUUUGGgugCGUCGGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.