miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17289 3' -48.9 NC_004367.1 + 84743 0.66 0.999498
Target:  5'- uCCCugCug-C-CGAAUGUGCUUAUGa -3'
miRNA:   3'- -GGGugGuaaGuGUUUGCGCGAAUGCc -5'
17289 3' -48.9 NC_004367.1 + 41342 0.66 0.999378
Target:  5'- gCCACCAUUgCACuaaugauAACGgGagaaggaUUGCGGg -3'
miRNA:   3'- gGGUGGUAA-GUGu------UUGCgCg------AAUGCC- -5'
17289 3' -48.9 NC_004367.1 + 15366 0.66 0.999378
Target:  5'- cCCCACaaAUUCACGAccgaauuccauACGUGUUUGUGGc -3'
miRNA:   3'- -GGGUGg-UAAGUGUU-----------UGCGCGAAUGCC- -5'
17289 3' -48.9 NC_004367.1 + 82178 0.66 0.999232
Target:  5'- uCUCACCGUcgcUCACAAGCGUuuccucaaUUugGGc -3'
miRNA:   3'- -GGGUGGUA---AGUGUUUGCGcg------AAugCC- -5'
17289 3' -48.9 NC_004367.1 + 76433 0.66 0.999232
Target:  5'- uCCCACUAUgaguguaacuuUCACAAACaaUGCUUAUGc -3'
miRNA:   3'- -GGGUGGUA-----------AGUGUUUGc-GCGAAUGCc -5'
17289 3' -48.9 NC_004367.1 + 5987 0.66 0.998853
Target:  5'- uUCCACCggUCACAAGCaCGCa----- -3'
miRNA:   3'- -GGGUGGuaAGUGUUUGcGCGaaugcc -5'
17289 3' -48.9 NC_004367.1 + 65588 0.66 0.998853
Target:  5'- uUCCACaCAUUCACAuagGAUGCaGCc--CGGg -3'
miRNA:   3'- -GGGUG-GUAAGUGU---UUGCG-CGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 29914 0.67 0.997154
Target:  5'- --aGCUGUUCACAuaGACGCGCc--CGGa -3'
miRNA:   3'- gggUGGUAAGUGU--UUGCGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 64912 0.68 0.995376
Target:  5'- uCCCACCGUUUACA---GUGCauuCGGc -3'
miRNA:   3'- -GGGUGGUAAGUGUuugCGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 84303 0.68 0.995376
Target:  5'- uUCCGCCGUaucCGCAuuCGUGCUgaauagcgcACGGa -3'
miRNA:   3'- -GGGUGGUAa--GUGUuuGCGCGAa--------UGCC- -5'
17289 3' -48.9 NC_004367.1 + 27466 0.68 0.995376
Target:  5'- uUCCACCGUgugcCAUAGACGCGg--ACGu -3'
miRNA:   3'- -GGGUGGUAa---GUGUUUGCGCgaaUGCc -5'
17289 3' -48.9 NC_004367.1 + 135334 0.68 0.994613
Target:  5'- uCCgGCUuggUAauaGGugGCGCUUGCGGg -3'
miRNA:   3'- -GGgUGGuaaGUg--UUugCGCGAAUGCC- -5'
17289 3' -48.9 NC_004367.1 + 40605 0.68 0.993751
Target:  5'- aCCGCCAUuuccugcaggUCACcuACGCGUUcUACGu -3'
miRNA:   3'- gGGUGGUA----------AGUGuuUGCGCGA-AUGCc -5'
17289 3' -48.9 NC_004367.1 + 90587 0.7 0.986011
Target:  5'- gCC-CCGUUUGgGGACGCGCUUucUGGa -3'
miRNA:   3'- gGGuGGUAAGUgUUUGCGCGAAu-GCC- -5'
17289 3' -48.9 NC_004367.1 + 11235 0.7 0.985838
Target:  5'- cUCCACCAcUCagaagaaACAGACGUGag-GCGGg -3'
miRNA:   3'- -GGGUGGUaAG-------UGUUUGCGCgaaUGCC- -5'
17289 3' -48.9 NC_004367.1 + 36556 0.7 0.980077
Target:  5'- gCCACCAUUUcc---CGUGUUUGCGGa -3'
miRNA:   3'- gGGUGGUAAGuguuuGCGCGAAUGCC- -5'
17289 3' -48.9 NC_004367.1 + 84122 0.7 0.980077
Target:  5'- -gCGCUAUUCagcACGAAUGCGgaUACGGc -3'
miRNA:   3'- ggGUGGUAAG---UGUUUGCGCgaAUGCC- -5'
17289 3' -48.9 NC_004367.1 + 143155 0.7 0.977733
Target:  5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3'
miRNA:   3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5'
17289 3' -48.9 NC_004367.1 + 143483 0.7 0.977733
Target:  5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3'
miRNA:   3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5'
17289 3' -48.9 NC_004367.1 + 142827 0.7 0.977733
Target:  5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3'
miRNA:   3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.