Results 1 - 20 of 59 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 11200 | 0.66 | 0.843523 |
Target: 5'- aCCCCCU--GACaCCGCCAacucccCCACCc -3' miRNA: 3'- aGGGGGAuuCUG-GGUGGUccu---GGUGG- -5' |
|||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 135145 | 0.66 | 0.83551 |
Target: 5'- gCgUCCUGAGcCCCGCaAGcGCCACCu -3' miRNA: 3'- aGgGGGAUUCuGGGUGgUCcUGGUGG- -5' |
|||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 129836 | 0.66 | 0.83551 |
Target: 5'- aCCCCCaAGGGgCgGCCGGGuCCcuauCCu -3' miRNA: 3'- aGGGGGaUUCUgGgUGGUCCuGGu---GG- -5' |
|||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 121109 | 0.66 | 0.83551 |
Target: 5'- aCCCCCaAGGGgCgGCCGGGuCCcuauCCu -3' miRNA: 3'- aGGGGGaUUCUgGgUGGUCCuGGu---GG- -5' |
|||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 126927 | 0.66 | 0.83551 |
Target: 5'- aCCCCCaAGGGgCgGCCGGGuCCcuauCCu -3' miRNA: 3'- aGGGGGaUUCUgGgUGGUCCuGGu---GG- -5' |
|||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 124018 | 0.66 | 0.83551 |
Target: 5'- aCCCCCaAGGGgCgGCCGGGuCCcuauCCu -3' miRNA: 3'- aGGGGGaUUCUgGgUGGUCCuGGu---GG- -5' |
|||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 17072 | 0.66 | 0.827318 |
Target: 5'- cCUUUCUAGGAgCCugCAGGAUUGCa -3' miRNA: 3'- aGGGGGAUUCUgGGugGUCCUGGUGg -5' |
|||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 29992 | 0.66 | 0.810431 |
Target: 5'- aCCCCggGGcGAUCCGCCGGGcggcucaaaugaGCCGCa -3' miRNA: 3'- aGGGGgaUU-CUGGGUGGUCC------------UGGUGg -5' |
|||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 62434 | 0.67 | 0.79292 |
Target: 5'- gUCUaCCUAAccUCCACCAagauGGGCCGCCa -3' miRNA: 3'- -AGGgGGAUUcuGGGUGGU----CCUGGUGG- -5' |
|||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 121816 | 0.67 | 0.774851 |
Target: 5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3' miRNA: 3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5' |
|||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 127635 | 0.67 | 0.774851 |
Target: 5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3' miRNA: 3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5' |
|||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 124726 | 0.67 | 0.774851 |
Target: 5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3' miRNA: 3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5' |
|||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 127435 | 0.67 | 0.774851 |
Target: 5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3' miRNA: 3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5' |
|||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 124626 | 0.67 | 0.774851 |
Target: 5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3' miRNA: 3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5' |
|||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 130444 | 0.67 | 0.774851 |
Target: 5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3' miRNA: 3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5' |
|||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 9983 | 0.67 | 0.774851 |
Target: 5'- gCCCCUUAAGcCCCGCCucgucuACaCGCCg -3' miRNA: 3'- aGGGGGAUUCuGGGUGGucc---UG-GUGG- -5' |
|||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 135722 | 0.67 | 0.774851 |
Target: 5'- uUCCCCUUuu--CCCGCUAaGGCCAUCu -3' miRNA: 3'- -AGGGGGAuucuGGGUGGUcCUGGUGG- -5' |
|||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 121717 | 0.67 | 0.774851 |
Target: 5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3' miRNA: 3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5' |
|||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 121617 | 0.67 | 0.774851 |
Target: 5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3' miRNA: 3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5' |
|||||||
17294 | 5' | -58.2 | NC_004367.1 | + | 124526 | 0.67 | 0.774851 |
Target: 5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3' miRNA: 3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home