miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17294 5' -58.2 NC_004367.1 + 121916 0.67 0.756292
Target:  5'- gUCCCCUuAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17294 5' -58.2 NC_004367.1 + 127435 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17294 5' -58.2 NC_004367.1 + 127535 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17294 5' -58.2 NC_004367.1 + 127635 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17294 5' -58.2 NC_004367.1 + 130344 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17294 5' -58.2 NC_004367.1 + 130444 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17294 5' -58.2 NC_004367.1 + 9983 0.67 0.774851
Target:  5'- gCCCCUUAAGcCCCGCCucgucuACaCGCCg -3'
miRNA:   3'- aGGGGGAUUCuGGGUGGucc---UG-GUGG- -5'
17294 5' -58.2 NC_004367.1 + 39198 0.67 0.772097
Target:  5'- gCCCCaaaaucuuggaaucgGAGGuCUCGCCuAGGACCAUCa -3'
miRNA:   3'- aGGGGga-------------UUCU-GGGUGG-UCCUGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 63093 0.67 0.765629
Target:  5'- gCCCCacga-ACCCugUagagcAGGACCGCCa -3'
miRNA:   3'- aGGGGgauucUGGGugG-----UCCUGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 124726 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17294 5' -58.2 NC_004367.1 + 124626 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17294 5' -58.2 NC_004367.1 + 124526 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17294 5' -58.2 NC_004367.1 + 124018 0.66 0.83551
Target:  5'- aCCCCCaAGGGgCgGCCGGGuCCcuauCCu -3'
miRNA:   3'- aGGGGGaUUCUgGgUGGUCCuGGu---GG- -5'
17294 5' -58.2 NC_004367.1 + 126927 0.66 0.83551
Target:  5'- aCCCCCaAGGGgCgGCCGGGuCCcuauCCu -3'
miRNA:   3'- aGGGGGaUUCUgGgUGGUCCuGGu---GG- -5'
17294 5' -58.2 NC_004367.1 + 129836 0.66 0.83551
Target:  5'- aCCCCCaAGGGgCgGCCGGGuCCcuauCCu -3'
miRNA:   3'- aGGGGGaUUCUgGgUGGUCCuGGu---GG- -5'
17294 5' -58.2 NC_004367.1 + 29992 0.66 0.810431
Target:  5'- aCCCCggGGcGAUCCGCCGGGcggcucaaaugaGCCGCa -3'
miRNA:   3'- aGGGGgaUU-CUGGGUGGUCC------------UGGUGg -5'
17294 5' -58.2 NC_004367.1 + 62434 0.67 0.79292
Target:  5'- gUCUaCCUAAccUCCACCAagauGGGCCGCCa -3'
miRNA:   3'- -AGGgGGAUUcuGGGUGGU----CCUGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 121617 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17294 5' -58.2 NC_004367.1 + 121717 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17294 5' -58.2 NC_004367.1 + 121816 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.