Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17299 | 3' | -58.2 | NC_004367.1 | + | 23475 | 0.67 | 0.744825 |
Target: 5'- -gAGCCCCACGGCCgg--GCCUg--- -3' miRNA: 3'- cgUUGGGGUGCCGGgugaCGGAaguu -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 56896 | 0.67 | 0.744825 |
Target: 5'- -gAGCCCCACGGCCgg--GCCUg--- -3' miRNA: 3'- cgUUGGGGUGCCGGgugaCGGAaguu -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 56996 | 0.67 | 0.744825 |
Target: 5'- -gAGCCCCACGGCCgg--GCCUg--- -3' miRNA: 3'- cgUUGGGGUGCCGGgugaCGGAaguu -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 56976 | 0.67 | 0.744825 |
Target: 5'- -gAGCCCCACGGCCgg--GCCUg--- -3' miRNA: 3'- cgUUGGGGUGCCGGgugaCGGAaguu -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 56956 | 0.67 | 0.744825 |
Target: 5'- -gAGCCCCACGGCCgg--GCCUg--- -3' miRNA: 3'- cgUUGGGGUGCCGGgugaCGGAaguu -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 56936 | 0.67 | 0.744825 |
Target: 5'- -gAGCCCCACGGCCgg--GCCUg--- -3' miRNA: 3'- cgUUGGGGUGCCGGgugaCGGAaguu -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 56916 | 0.67 | 0.744825 |
Target: 5'- -gAGCCCCACGGCCgg--GCCUg--- -3' miRNA: 3'- cgUUGGGGUGCCGGgugaCGGAaguu -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 56857 | 0.67 | 0.744825 |
Target: 5'- -gAGCCCCACGGCCgg--GCCUg--- -3' miRNA: 3'- cgUUGGGGUGCCGGgugaCGGAaguu -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 56837 | 0.67 | 0.744825 |
Target: 5'- -gAGCCCCACGGCCgg--GCCUg--- -3' miRNA: 3'- cgUUGGGGUGCCGGgugaCGGAaguu -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 56817 | 0.67 | 0.744825 |
Target: 5'- -gAGCCCCACGGCCgg--GCCUg--- -3' miRNA: 3'- cgUUGGGGUGCCGGgugaCGGAaguu -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 23535 | 0.67 | 0.744825 |
Target: 5'- -gAGCCCCACGGCCgg--GCCUg--- -3' miRNA: 3'- cgUUGGGGUGCCGGgugaCGGAaguu -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 23495 | 0.67 | 0.744825 |
Target: 5'- -gAGCCCCACGGCCgg--GCCUg--- -3' miRNA: 3'- cgUUGGGGUGCCGGgugaCGGAaguu -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 57016 | 0.67 | 0.744825 |
Target: 5'- -gAGCCCCACGGCCgg--GCCUg--- -3' miRNA: 3'- cgUUGGGGUGCCGGgugaCGGAaguu -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 57036 | 0.68 | 0.67497 |
Target: 5'- -gAGCCCCACGGCCgg--GCCUaCAc -3' miRNA: 3'- cgUUGGGGUGCCGGgugaCGGAaGUu -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 146707 | 0.68 | 0.644325 |
Target: 5'- gGCGuCCCC-CGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 148018 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 149657 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 148346 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 148674 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 149001 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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