miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17316 5' -46.1 NC_004367.1 + 133524 1.14 0.011311
Target:  5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133220 1.14 0.011311
Target:  5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133300 1.14 0.011311
Target:  5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133436 1.14 0.011311
Target:  5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133612 1.14 0.011311
Target:  5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133260 1.14 0.011311
Target:  5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133717 1.01 0.067243
Target:  5'- aGCCAACAAAUGUUGGCaCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGcGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133132 1.01 0.071276
Target:  5'- gGCCAACAAAUGUUGGCaCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGcGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133756 0.92 0.219154
Target:  5'- cGCCAACAAAcGUUGGCaCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUaCAACCGcGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133652 0.88 0.381609
Target:  5'- cGCCAACAGAcGUUGGCaCUAACAAACg -3'
miRNA:   3'- -CGGUUGUUUaCAACCGcGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133118 0.84 0.541185
Target:  5'- cGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133078 0.84 0.541185
Target:  5'- cGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133038 0.83 0.573851
Target:  5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133254 0.83 0.573851
Target:  5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133342 0.83 0.573851
Target:  5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133430 0.83 0.573851
Target:  5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133857 0.8 0.759502
Target:  5'- aCCAGCAAAUGUUGGUcuCCAGCAAc- -3'
miRNA:   3'- cGGUUGUUUACAACCGc-GGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 133591 0.8 0.769781
Target:  5'- uGCCAACGuuUGUUGGCGaggacaCAugAGACu -3'
miRNA:   3'- -CGGUUGUuuACAACCGCg-----GUugUUUG- -5'
17316 5' -46.1 NC_004367.1 + 132950 0.79 0.779914
Target:  5'- gGgCAACGuuUGUUGGUGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133535 0.79 0.779914
Target:  5'- gGgCAACGuuUGUUGGUGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.