miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17316 5' -46.1 NC_004367.1 + 2934 0.76 0.92026
Target:  5'- cCCAAUAGA---UGGCGCCAACAuACc -3'
miRNA:   3'- cGGUUGUUUacaACCGCGGUUGUuUG- -5'
17316 5' -46.1 NC_004367.1 + 3114 0.66 0.999947
Target:  5'- aGCaaaGCGGguAUGUUGGCGCCAu----- -3'
miRNA:   3'- -CGgu-UGUU--UACAACCGCGGUuguuug -5'
17316 5' -46.1 NC_004367.1 + 7649 0.72 0.988758
Target:  5'- uGCUAGuuaaucCGAGUGUUGGCGUgG-CAAACa -3'
miRNA:   3'- -CGGUU------GUUUACAACCGCGgUuGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 11431 0.68 0.998939
Target:  5'- gGCCAGCGcg---UGGUGCCAA-GAGCa -3'
miRNA:   3'- -CGGUUGUuuacaACCGCGGUUgUUUG- -5'
17316 5' -46.1 NC_004367.1 + 29824 0.69 0.997689
Target:  5'- gGCCAACAuaguuAGUGUcaUGGaCGCCcACGAu- -3'
miRNA:   3'- -CGGUUGU-----UUACA--ACC-GCGGuUGUUug -5'
17316 5' -46.1 NC_004367.1 + 31090 0.76 0.92026
Target:  5'- uCCGACAAAUGgaGG-GCCGugAGACg -3'
miRNA:   3'- cGGUUGUUUACaaCCgCGGUugUUUG- -5'
17316 5' -46.1 NC_004367.1 + 35684 0.67 0.999788
Target:  5'- cGCCAuagaaAUAAGaGgcGGCGUCAGCAcuAACa -3'
miRNA:   3'- -CGGU-----UGUUUaCaaCCGCGGUUGU--UUG- -5'
17316 5' -46.1 NC_004367.1 + 36272 0.66 0.999929
Target:  5'- aGCCGACAcgAGUGUgcacucauUGGCcacCCGACAcucaAGCa -3'
miRNA:   3'- -CGGUUGU--UUACA--------ACCGc--GGUUGU----UUG- -5'
17316 5' -46.1 NC_004367.1 + 44055 0.75 0.944327
Target:  5'- uCCAGCGGGUGUUGGaaggaaacgcucagGCCGGCAGAa -3'
miRNA:   3'- cGGUUGUUUACAACCg-------------CGGUUGUUUg -5'
17316 5' -46.1 NC_004367.1 + 52261 0.75 0.931874
Target:  5'- aGCCAGCAGAUaucGUUGaGCGCUGGCGccuggAACa -3'
miRNA:   3'- -CGGUUGUUUA---CAAC-CGCGGUUGU-----UUG- -5'
17316 5' -46.1 NC_004367.1 + 52458 0.7 0.997231
Target:  5'- aCCGAUggGaguUGUUccaGGCGCCAGCGcucAACg -3'
miRNA:   3'- cGGUUGuuU---ACAA---CCGCGGUUGU---UUG- -5'
17316 5' -46.1 NC_004367.1 + 66646 0.66 0.999947
Target:  5'- -aCGGCuGGUGa-GGCGgCAACAGACa -3'
miRNA:   3'- cgGUUGuUUACaaCCGCgGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 68735 0.66 0.999929
Target:  5'- aGCCGggACAuuUGac-GCGCCGugGGACa -3'
miRNA:   3'- -CGGU--UGUuuACaacCGCGGUugUUUG- -5'
17316 5' -46.1 NC_004367.1 + 70017 0.67 0.999788
Target:  5'- aGCCGugGGAga--GGCGCUAGCcguGGCa -3'
miRNA:   3'- -CGGUugUUUacaaCCGCGGUUGu--UUG- -5'
17316 5' -46.1 NC_004367.1 + 74034 0.66 0.999905
Target:  5'- uGCCAuuguuucugGCAauGAUGUuaUGGUGUCGGCAGc- -3'
miRNA:   3'- -CGGU---------UGU--UUACA--ACCGCGGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 84656 0.77 0.870908
Target:  5'- aGCCAACAAA---UGGCGCCGuACAGGu -3'
miRNA:   3'- -CGGUUGUUUacaACCGCGGU-UGUUUg -5'
17316 5' -46.1 NC_004367.1 + 87501 0.67 0.999837
Target:  5'- aCUAACAAAgagGUaUGGauagacgcuCGCCGGCAGACu -3'
miRNA:   3'- cGGUUGUUUa--CA-ACC---------GCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 101574 0.71 0.991498
Target:  5'- cGCCGgaGCAAuaGUgGGCGCCAAUGAGa -3'
miRNA:   3'- -CGGU--UGUUuaCAaCCGCGGUUGUUUg -5'
17316 5' -46.1 NC_004367.1 + 106812 0.69 0.998416
Target:  5'- cGCCAuCAAAcGUUGGCGgCGGCc--- -3'
miRNA:   3'- -CGGUuGUUUaCAACCGCgGUUGuuug -5'
17316 5' -46.1 NC_004367.1 + 107941 0.69 0.998044
Target:  5'- aCCAgcguuggacgggcACAAGUGcgGGCGCCcccCAGACa -3'
miRNA:   3'- cGGU-------------UGUUUACaaCCGCGGuu-GUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.