miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17316 5' -46.1 NC_004367.1 + 108997 0.68 0.999308
Target:  5'- uGCCAACcAGUGggugGaGCGCgcGCAGACa -3'
miRNA:   3'- -CGGUUGuUUACaa--C-CGCGguUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 121010 0.72 0.981269
Target:  5'- gGCCAACuAGAUGUcggGGCaGCCAGCc--- -3'
miRNA:   3'- -CGGUUG-UUUACAa--CCG-CGGUUGuuug -5'
17316 5' -46.1 NC_004367.1 + 121151 0.66 0.999905
Target:  5'- gGCUGucUAAGUGUcuUGGCaGCCAGCAAc- -3'
miRNA:   3'- -CGGUu-GUUUACA--ACCG-CGGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 123919 0.72 0.981269
Target:  5'- gGCCAACuAGAUGUcggGGCaGCCAGCc--- -3'
miRNA:   3'- -CGGUUG-UUUACAa--CCG-CGGUUGuuug -5'
17316 5' -46.1 NC_004367.1 + 124060 0.66 0.999905
Target:  5'- gGCUGucUAAGUGUcuUGGCaGCCAGCAAc- -3'
miRNA:   3'- -CGGUu-GUUUACA--ACCG-CGGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 126828 0.72 0.981269
Target:  5'- gGCCAACuAGAUGUcggGGCaGCCAGCc--- -3'
miRNA:   3'- -CGGUUG-UUUACAa--CCG-CGGUUGuuug -5'
17316 5' -46.1 NC_004367.1 + 126969 0.66 0.999905
Target:  5'- gGCUGucUAAGUGUcuUGGCaGCCAGCAAc- -3'
miRNA:   3'- -CGGUu-GUUUACA--ACCG-CGGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 129878 0.66 0.999905
Target:  5'- gGCUGucUAAGUGUcuUGGCaGCCAGCAAc- -3'
miRNA:   3'- -CGGUu-GUUUACA--ACCG-CGGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 131761 0.68 0.999446
Target:  5'- gGUCAACAAcUGUUGGUaaacGcCCAACAGc- -3'
miRNA:   3'- -CGGUUGUUuACAACCG----C-GGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 131926 0.66 0.999961
Target:  5'- aCCAACAGuUGUUGa--CCAACGAACc -3'
miRNA:   3'- cGGUUGUUuACAACcgcGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 132886 0.72 0.981269
Target:  5'- gGCCAACAAAUGUgGGCaCCAcCAu-- -3'
miRNA:   3'- -CGGUUGUUUACAaCCGcGGUuGUuug -5'
17316 5' -46.1 NC_004367.1 + 132950 0.79 0.779914
Target:  5'- gGgCAACGuuUGUUGGUGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133038 0.83 0.573851
Target:  5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133068 0.77 0.89368
Target:  5'- cGUCAACAAAUGgUGGUGCCcACAu-- -3'
miRNA:   3'- -CGGUUGUUUACaACCGCGGuUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133078 0.84 0.541185
Target:  5'- cGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133118 0.84 0.541185
Target:  5'- cGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133132 1.01 0.071276
Target:  5'- gGCCAACAAAUGUUGGCaCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGcGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133220 1.14 0.011311
Target:  5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133254 0.83 0.573851
Target:  5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133260 1.14 0.011311
Target:  5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.