miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17316 5' -46.1 NC_004367.1 + 133747 0.73 0.976353
Target:  5'- gGCCAACGuuUGUUGGUGCUuuggucACAGu- -3'
miRNA:   3'- -CGGUUGUuuACAACCGCGGu-----UGUUug -5'
17316 5' -46.1 NC_004367.1 + 87501 0.67 0.999837
Target:  5'- aCUAACAAAgagGUaUGGauagacgcuCGCCGGCAGACu -3'
miRNA:   3'- cGGUUGUUUa--CA-ACC---------GCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133486 0.71 0.993681
Target:  5'- uGCCAACGucUGUUGGCGagGACccuugAGACu -3'
miRNA:   3'- -CGGUUGUuuACAACCGCggUUG-----UUUG- -5'
17316 5' -46.1 NC_004367.1 + 52261 0.75 0.931874
Target:  5'- aGCCAGCAGAUaucGUUGaGCGCUGGCGccuggAACa -3'
miRNA:   3'- -CGGUUGUUUA---CAAC-CGCGGUUGU-----UUG- -5'
17316 5' -46.1 NC_004367.1 + 133635 0.68 0.998939
Target:  5'- gGgCAACGuuUGUUGGUGgCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCgGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 68735 0.66 0.999929
Target:  5'- aGCCGggACAuuUGac-GCGCCGugGGACa -3'
miRNA:   3'- -CGGU--UGUuuACaacCGCGGUugUUUG- -5'
17316 5' -46.1 NC_004367.1 + 135958 0.68 0.999549
Target:  5'- uGCCGcccccucGCAGGgcc-GGCGUCAACAAAUa -3'
miRNA:   3'- -CGGU-------UGUUUacaaCCGCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133694 0.76 0.92026
Target:  5'- aCCAACAuuUGcUGGUGCCAACGu-- -3'
miRNA:   3'- cGGUUGUuuACaACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 31090 0.76 0.92026
Target:  5'- uCCGACAAAUGgaGG-GCCGugAGACg -3'
miRNA:   3'- cGGUUGUUUACaaCCgCGGUugUUUG- -5'
17316 5' -46.1 NC_004367.1 + 121010 0.72 0.981269
Target:  5'- gGCCAACuAGAUGUcggGGCaGCCAGCc--- -3'
miRNA:   3'- -CGGUUG-UUUACAa--CCG-CGGUUGuuug -5'
17316 5' -46.1 NC_004367.1 + 126828 0.72 0.981269
Target:  5'- gGCCAACuAGAUGUcggGGCaGCCAGCc--- -3'
miRNA:   3'- -CGGUUG-UUUACAa--CCG-CGGUUGuuug -5'
17316 5' -46.1 NC_004367.1 + 126969 0.66 0.999905
Target:  5'- gGCUGucUAAGUGUcuUGGCaGCCAGCAAc- -3'
miRNA:   3'- -CGGUu-GUUUACA--ACCG-CGGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 133524 1.14 0.011311
Target:  5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133436 1.14 0.011311
Target:  5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133300 1.14 0.011311
Target:  5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133260 1.14 0.011311
Target:  5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133717 1.01 0.067243
Target:  5'- aGCCAACAAAUGUUGGCaCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGcGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 35684 0.67 0.999788
Target:  5'- cGCCAuagaaAUAAGaGgcGGCGUCAGCAcuAACa -3'
miRNA:   3'- -CGGU-----UGUUUaCaaCCGCGGUUGU--UUG- -5'
17316 5' -46.1 NC_004367.1 + 29824 0.69 0.997689
Target:  5'- gGCCAACAuaguuAGUGUcaUGGaCGCCcACGAu- -3'
miRNA:   3'- -CGGUUGU-----UUACA--ACC-GCGGuUGUUug -5'
17316 5' -46.1 NC_004367.1 + 52458 0.7 0.997231
Target:  5'- aCCGAUggGaguUGUUccaGGCGCCAGCGcucAACg -3'
miRNA:   3'- cGGUUGuuU---ACAA---CCGCGGUUGU---UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.