miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17316 5' -46.1 NC_004367.1 + 133078 0.84 0.541185
Target:  5'- cGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 132886 0.72 0.981269
Target:  5'- gGCCAACAAAUGUgGGCaCCAcCAu-- -3'
miRNA:   3'- -CGGUUGUUUACAaCCGcGGUuGUuug -5'
17316 5' -46.1 NC_004367.1 + 133486 0.71 0.993681
Target:  5'- uGCCAACGucUGUUGGCGagGACccuugAGACu -3'
miRNA:   3'- -CGGUUGUuuACAACCGCggUUG-----UUUG- -5'
17316 5' -46.1 NC_004367.1 + 133294 0.66 0.999961
Target:  5'- cGgCAACGuuUGUUGGCGaCGACccuugAGACu -3'
miRNA:   3'- -CgGUUGUuuACAACCGCgGUUG-----UUUG- -5'
17316 5' -46.1 NC_004367.1 + 133342 0.83 0.573851
Target:  5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133430 0.83 0.573851
Target:  5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 132950 0.79 0.779914
Target:  5'- gGgCAACGuuUGUUGGUGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133535 0.79 0.779914
Target:  5'- gGgCAACGuuUGUUGGUGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133694 0.76 0.92026
Target:  5'- aCCAACAuuUGcUGGUGCCAACGu-- -3'
miRNA:   3'- cGGUUGUuuACaACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 126828 0.72 0.981269
Target:  5'- gGCCAACuAGAUGUcggGGCaGCCAGCc--- -3'
miRNA:   3'- -CGGUUG-UUUACAa--CCG-CGGUUGuuug -5'
17316 5' -46.1 NC_004367.1 + 133747 0.73 0.976353
Target:  5'- gGCCAACGuuUGUUGGUGCUuuggucACAGu- -3'
miRNA:   3'- -CGGUUGUuuACAACCGCGGu-----UGUUug -5'
17316 5' -46.1 NC_004367.1 + 31090 0.76 0.92026
Target:  5'- uCCGACAAAUGgaGG-GCCGugAGACg -3'
miRNA:   3'- cGGUUGUUUACaaCCgCGGUugUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133118 0.84 0.541185
Target:  5'- cGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 121010 0.72 0.981269
Target:  5'- gGCCAACuAGAUGUcggGGCaGCCAGCc--- -3'
miRNA:   3'- -CGGUUG-UUUACAa--CCG-CGGUUGuuug -5'
17316 5' -46.1 NC_004367.1 + 133038 0.83 0.573851
Target:  5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 2934 0.76 0.92026
Target:  5'- cCCAAUAGA---UGGCGCCAACAuACc -3'
miRNA:   3'- cGGUUGUUUacaACCGCGGUUGUuUG- -5'
17316 5' -46.1 NC_004367.1 + 123919 0.72 0.981269
Target:  5'- gGCCAACuAGAUGUcggGGCaGCCAGCc--- -3'
miRNA:   3'- -CGGUUG-UUUACAa--CCG-CGGUUGuuug -5'
17316 5' -46.1 NC_004367.1 + 101574 0.71 0.991498
Target:  5'- cGCCGgaGCAAuaGUgGGCGCCAAUGAGa -3'
miRNA:   3'- -CGGU--UGUUuaCAaCCGCGGUUGUUUg -5'
17316 5' -46.1 NC_004367.1 + 133254 0.83 0.573851
Target:  5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133591 0.8 0.769781
Target:  5'- uGCCAACGuuUGUUGGCGaggacaCAugAGACu -3'
miRNA:   3'- -CGGUUGUuuACAACCGCg-----GUugUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.