Results 1 - 20 of 62 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 133652 | 0.88 | 0.381609 |
Target: 5'- cGCCAACAGAcGUUGGCaCUAACAAACg -3' miRNA: 3'- -CGGUUGUUUaCAACCGcGGUUGUUUG- -5' |
|||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 35684 | 0.67 | 0.999788 |
Target: 5'- cGCCAuagaaAUAAGaGgcGGCGUCAGCAcuAACa -3' miRNA: 3'- -CGGU-----UGUUUaCaaCCGCGGUUGU--UUG- -5' |
|||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 29824 | 0.69 | 0.997689 |
Target: 5'- gGCCAACAuaguuAGUGUcaUGGaCGCCcACGAu- -3' miRNA: 3'- -CGGUUGU-----UUACA--ACC-GCGGuUGUUug -5' |
|||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 52458 | 0.7 | 0.997231 |
Target: 5'- aCCGAUggGaguUGUUccaGGCGCCAGCGcucAACg -3' miRNA: 3'- cGGUUGuuU---ACAA---CCGCGGUUGU---UUG- -5' |
|||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 7649 | 0.72 | 0.988758 |
Target: 5'- uGCUAGuuaaucCGAGUGUUGGCGUgG-CAAACa -3' miRNA: 3'- -CGGUU------GUUUACAACCGCGgUuGUUUG- -5' |
|||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 44055 | 0.75 | 0.944327 |
Target: 5'- uCCAGCGGGUGUUGGaaggaaacgcucagGCCGGCAGAa -3' miRNA: 3'- cGGUUGUUUACAACCg-------------CGGUUGUUUg -5' |
|||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 133068 | 0.77 | 0.89368 |
Target: 5'- cGUCAACAAAUGgUGGUGCCcACAu-- -3' miRNA: 3'- -CGGUUGUUUACaACCGCGGuUGUuug -5' |
|||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 84656 | 0.77 | 0.870908 |
Target: 5'- aGCCAACAAA---UGGCGCCGuACAGGu -3' miRNA: 3'- -CGGUUGUUUacaACCGCGGU-UGUUUg -5' |
|||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 133816 | 0.78 | 0.84587 |
Target: 5'- gGCCAAgGAAUGUUGcCaCCAACAAACg -3' miRNA: 3'- -CGGUUgUUUACAACcGcGGUUGUUUG- -5' |
|||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 70017 | 0.67 | 0.999788 |
Target: 5'- aGCCGugGGAga--GGCGCUAGCcguGGCa -3' miRNA: 3'- -CGGUugUUUacaaCCGCGGUUGu--UUG- -5' |
|||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 135469 | 0.67 | 0.999875 |
Target: 5'- uGCCGAguAgcaGUGUUGuGCuGCCcgggGACAAGCg -3' miRNA: 3'- -CGGUUguU---UACAAC-CG-CGG----UUGUUUG- -5' |
|||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 74034 | 0.66 | 0.999905 |
Target: 5'- uGCCAuuguuucugGCAauGAUGUuaUGGUGUCGGCAGc- -3' miRNA: 3'- -CGGU---------UGU--UUACA--ACCGCGGUUGUUug -5' |
|||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 3114 | 0.66 | 0.999947 |
Target: 5'- aGCaaaGCGGguAUGUUGGCGCCAu----- -3' miRNA: 3'- -CGgu-UGUU--UACAACCGCGGUuguuug -5' |
|||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 133372 | 0.66 | 0.999947 |
Target: 5'- cGCCAACAAAcGUUG-C-CCAACAc-- -3' miRNA: 3'- -CGGUUGUUUaCAACcGcGGUUGUuug -5' |
|||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 36272 | 0.66 | 0.999929 |
Target: 5'- aGCCGACAcgAGUGUgcacucauUGGCcacCCGACAcucaAGCa -3' miRNA: 3'- -CGGUUGU--UUACA--------ACCGc--GGUUGU----UUG- -5' |
|||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 121151 | 0.66 | 0.999905 |
Target: 5'- gGCUGucUAAGUGUcuUGGCaGCCAGCAAc- -3' miRNA: 3'- -CGGUu-GUUUACA--ACCG-CGGUUGUUug -5' |
|||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 124060 | 0.66 | 0.999905 |
Target: 5'- gGCUGucUAAGUGUcuUGGCaGCCAGCAAc- -3' miRNA: 3'- -CGGUu-GUUUACA--ACCG-CGGUUGUUug -5' |
|||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 126969 | 0.66 | 0.999905 |
Target: 5'- gGCUGucUAAGUGUcuUGGCaGCCAGCAAc- -3' miRNA: 3'- -CGGUu-GUUUACA--ACCG-CGGUUGUUug -5' |
|||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 129878 | 0.66 | 0.999905 |
Target: 5'- gGCUGucUAAGUGUcuUGGCaGCCAGCAAc- -3' miRNA: 3'- -CGGUu-GUUUACA--ACCG-CGGUUGUUug -5' |
|||||||
17316 | 5' | -46.1 | NC_004367.1 | + | 133933 | 0.66 | 0.999905 |
Target: 5'- aCCAACAAcUGUgaccaaaGCaCCAACAAACg -3' miRNA: 3'- cGGUUGUUuACAac-----CGcGGUUGUUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home