miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17316 5' -46.1 NC_004367.1 + 135958 0.68 0.999549
Target:  5'- uGCCGcccccucGCAGGgcc-GGCGUCAACAAAUa -3'
miRNA:   3'- -CGGU-------UGUUUacaaCCGCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 135469 0.67 0.999875
Target:  5'- uGCCGAguAgcaGUGUUGuGCuGCCcgggGACAAGCg -3'
miRNA:   3'- -CGGUUguU---UACAAC-CG-CGG----UUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133933 0.66 0.999905
Target:  5'- aCCAACAAcUGUgaccaaaGCaCCAACAAACg -3'
miRNA:   3'- cGGUUGUUuACAac-----CGcGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133857 0.8 0.759502
Target:  5'- aCCAGCAAAUGUUGGUcuCCAGCAAc- -3'
miRNA:   3'- cGGUUGUUUACAACCGc-GGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 133816 0.78 0.84587
Target:  5'- gGCCAAgGAAUGUUGcCaCCAACAAACg -3'
miRNA:   3'- -CGGUUgUUUACAACcGcGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133756 0.92 0.219154
Target:  5'- cGCCAACAAAcGUUGGCaCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUaCAACCGcGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133747 0.73 0.976353
Target:  5'- gGCCAACGuuUGUUGGUGCUuuggucACAGu- -3'
miRNA:   3'- -CGGUUGUuuACAACCGCGGu-----UGUUug -5'
17316 5' -46.1 NC_004367.1 + 133717 1.01 0.067243
Target:  5'- aGCCAACAAAUGUUGGCaCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGcGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133694 0.76 0.92026
Target:  5'- aCCAACAuuUGcUGGUGCCAACGu-- -3'
miRNA:   3'- cGGUUGUuuACaACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133652 0.88 0.381609
Target:  5'- cGCCAACAGAcGUUGGCaCUAACAAACg -3'
miRNA:   3'- -CGGUUGUUUaCAACCGcGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133635 0.68 0.998939
Target:  5'- gGgCAACGuuUGUUGGUGgCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCgGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133612 1.14 0.011311
Target:  5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133591 0.8 0.769781
Target:  5'- uGCCAACGuuUGUUGGCGaggacaCAugAGACu -3'
miRNA:   3'- -CGGUUGUuuACAACCGCg-----GUugUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133535 0.79 0.779914
Target:  5'- gGgCAACGuuUGUUGGUGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133524 1.14 0.011311
Target:  5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133486 0.71 0.993681
Target:  5'- uGCCAACGucUGUUGGCGagGACccuugAGACu -3'
miRNA:   3'- -CGGUUGUuuACAACCGCggUUG-----UUUG- -5'
17316 5' -46.1 NC_004367.1 + 133436 1.14 0.011311
Target:  5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3'
miRNA:   3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133430 0.83 0.573851
Target:  5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133372 0.66 0.999947
Target:  5'- cGCCAACAAAcGUUG-C-CCAACAc-- -3'
miRNA:   3'- -CGGUUGUUUaCAACcGcGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133342 0.83 0.573851
Target:  5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.