miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17317 5' -49.8 NC_004367.1 + 126824 0.66 0.996019
Target:  5'- uAGU-GGCCAACuAGAUGUcggGGCAgCCAg -3'
miRNA:   3'- cUCAgUCGGUUG-UUUACAa--CCGU-GGU- -5'
17317 5' -49.8 NC_004367.1 + 123915 0.66 0.996019
Target:  5'- uAGU-GGCCAACuAGAUGUcggGGCAgCCAg -3'
miRNA:   3'- cUCAgUCGGUUG-UUUACAa--CCGU-GGU- -5'
17317 5' -49.8 NC_004367.1 + 121006 0.66 0.996019
Target:  5'- uAGU-GGCCAACuAGAUGUcggGGCAgCCAg -3'
miRNA:   3'- cUCAgUCGGUUG-UUUACAa--CCGU-GGU- -5'
17317 5' -49.8 NC_004367.1 + 100137 0.67 0.991491
Target:  5'- aGAGUCAGCgAACAAAcuacuaccagacuacGUuugaugaUGGCACCu -3'
miRNA:   3'- -CUCAGUCGgUUGUUUa--------------CA-------ACCGUGGu -5'
17317 5' -49.8 NC_004367.1 + 133573 0.67 0.991491
Target:  5'- --cUCGG-CAACGuuUGUUGGUGCCAa -3'
miRNA:   3'- cucAGUCgGUUGUuuACAACCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 39032 0.67 0.988811
Target:  5'- cAGUCuuuGGCgGACAuacUGUUGuGCACCAc -3'
miRNA:   3'- cUCAG---UCGgUUGUuu-ACAAC-CGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 131757 0.67 0.988811
Target:  5'- -cGUUGGUCAACAAcUGUUGGUAaacgcCCAa -3'
miRNA:   3'- cuCAGUCGGUUGUUuACAACCGU-----GGU- -5'
17317 5' -49.8 NC_004367.1 + 84657 0.67 0.987246
Target:  5'- ----aAGCCAACAAA---UGGCGCCGu -3'
miRNA:   3'- cucagUCGGUUGUUUacaACCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 3122 0.68 0.97677
Target:  5'- cGAGgCAGagcaaAGCGGguAUGUUGGCGCCAu -3'
miRNA:   3'- -CUCaGUCgg---UUGUU--UACAACCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 133864 0.69 0.971166
Target:  5'- -cGUUGGCacCAGCAAAUGUUGGUcuCCAg -3'
miRNA:   3'- cuCAGUCG--GUUGUUUACAACCGu-GGU- -5'
17317 5' -49.8 NC_004367.1 + 52259 0.69 0.964652
Target:  5'- ---aCAGCCAGCAGAUaucGUUGaGCGCUg -3'
miRNA:   3'- cucaGUCGGUUGUUUA---CAAC-CGUGGu -5'
17317 5' -49.8 NC_004367.1 + 132942 0.71 0.928513
Target:  5'- uGGGUUuuGGgCAACGuuUGUUGGUGCCAa -3'
miRNA:   3'- -CUCAG--UCgGUUGUuuACAACCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 133076 0.71 0.9228
Target:  5'- aGGGUCcucGUCAACAAAUGgUGGUGCCc -3'
miRNA:   3'- -CUCAGu--CGGUUGUUUACaACCGUGGu -5'
17317 5' -49.8 NC_004367.1 + 94236 0.71 0.904045
Target:  5'- gGAGUCGcCCGGCAAguAUGUUGGCuuCAg -3'
miRNA:   3'- -CUCAGUcGGUUGUU--UACAACCGugGU- -5'
17317 5' -49.8 NC_004367.1 + 69729 0.72 0.897262
Target:  5'- gGGGUCAGCCGGcCAAGUGccaUGGCaaguauacgACCAc -3'
miRNA:   3'- -CUCAGUCGGUU-GUUUACa--ACCG---------UGGU- -5'
17317 5' -49.8 NC_004367.1 + 133526 0.72 0.882916
Target:  5'- uGGGUCuugGGgCAACGuuUGUUGGUGCCAa -3'
miRNA:   3'- -CUCAG---UCgGUUGUuuACAACCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 133820 0.72 0.867566
Target:  5'- aAG-CGGCCAAgGAAUGUUGcCACCAa -3'
miRNA:   3'- cUCaGUCGGUUgUUUACAACcGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 133739 0.73 0.842765
Target:  5'- uGGGUUuuGGCCAACGuuUGUUGGUGCUu -3'
miRNA:   3'- -CUCAG--UCGGUUGUuuACAACCGUGGu -5'
17317 5' -49.8 NC_004367.1 + 133104 0.73 0.842765
Target:  5'- -uGUUGGCCGccucucggcaACGuuUGUUGGCGCCAa -3'
miRNA:   3'- cuCAGUCGGU----------UGUuuACAACCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 133064 0.73 0.842765
Target:  5'- -uGUUGGCCGccucucggcaACGuuUGUUGGCGCCAa -3'
miRNA:   3'- cuCAGUCGGU----------UGUuuACAACCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.