miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17358 3' -49.3 NC_004367.1 + 122468 0.66 0.99834
Target:  5'- aGCA---GCCUUCAcGGA--ACCCGCg -3'
miRNA:   3'- aCGUuaaUGGAGGU-CCUaaUGGGUGg -5'
17358 3' -49.3 NC_004367.1 + 125377 0.66 0.99834
Target:  5'- aGCA---GCCUUCAcGGA--ACCCGCg -3'
miRNA:   3'- aCGUuaaUGGAGGU-CCUaaUGGGUGg -5'
17358 3' -49.3 NC_004367.1 + 128286 0.66 0.99834
Target:  5'- aGCA---GCCUUCAcGGA--ACCCGCg -3'
miRNA:   3'- aCGUuaaUGGAGGU-CCUaaUGGGUGg -5'
17358 3' -49.3 NC_004367.1 + 47012 0.66 0.99834
Target:  5'- aGCAGUaauguuugUAUCUCCucAGGAU--CCCACg -3'
miRNA:   3'- aCGUUA--------AUGGAGG--UCCUAauGGGUGg -5'
17358 3' -49.3 NC_004367.1 + 97043 0.66 0.998276
Target:  5'- gGCAGgugagcccuCCUCCAGauaagccuCCCACCg -3'
miRNA:   3'- aCGUUaau------GGAGGUCcuaau---GGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 117236 0.66 0.998003
Target:  5'- gUGCccagGCCUCCcGGGUuuuccgggUGCCCagGCCu -3'
miRNA:   3'- -ACGuuaaUGGAGGuCCUA--------AUGGG--UGG- -5'
17358 3' -49.3 NC_004367.1 + 117288 0.66 0.998003
Target:  5'- gUGCccagGCCUCCcGGGUuuuccgggUGCCCagGCCu -3'
miRNA:   3'- -ACGuuaaUGGAGGuCCUA--------AUGGG--UGG- -5'
17358 3' -49.3 NC_004367.1 + 117184 0.66 0.998003
Target:  5'- gUGCccagGCCUCCcGGGUuuuccgggUGCCCagGCCu -3'
miRNA:   3'- -ACGuuaaUGGAGGuCCUA--------AUGGG--UGG- -5'
17358 3' -49.3 NC_004367.1 + 117132 0.66 0.998003
Target:  5'- gUGCccagGCCUCCcGGGUuuuccgggUGCCCagGCCu -3'
miRNA:   3'- -ACGuuaaUGGAGGuCCUA--------AUGGG--UGG- -5'
17358 3' -49.3 NC_004367.1 + 117080 0.66 0.998003
Target:  5'- gUGCccagGCCUCCcGGGUuuuccgggUGCCCagGCCu -3'
miRNA:   3'- -ACGuuaaUGGAGGuCCUA--------AUGGG--UGG- -5'
17358 3' -49.3 NC_004367.1 + 117028 0.66 0.998003
Target:  5'- gUGCccagGCCUCCcGGGUuuuccgggUGCCCagGCCu -3'
miRNA:   3'- -ACGuuaaUGGAGGuCCUA--------AUGGG--UGG- -5'
17358 3' -49.3 NC_004367.1 + 116976 0.66 0.998003
Target:  5'- gUGCccagGCCUCCcGGGUuuuccgggUGCCCagGCCu -3'
miRNA:   3'- -ACGuuaaUGGAGGuCCUA--------AUGGG--UGG- -5'
17358 3' -49.3 NC_004367.1 + 116924 0.66 0.998003
Target:  5'- gUGCccagGCCUCCcGGGUuuuccgggUGCCCagGCCu -3'
miRNA:   3'- -ACGuuaaUGGAGGuCCUA--------AUGGG--UGG- -5'
17358 3' -49.3 NC_004367.1 + 104568 0.66 0.997611
Target:  5'- -----aUACCauu-GGAUUACCCGCCa -3'
miRNA:   3'- acguuaAUGGagguCCUAAUGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 116719 0.66 0.997568
Target:  5'- gUGCccagGCCUCCcGGGUuuccgggUGCCCagGCCu -3'
miRNA:   3'- -ACGuuaaUGGAGGuCCUA-------AUGGG--UGG- -5'
17358 3' -49.3 NC_004367.1 + 116872 0.66 0.997568
Target:  5'- gUGCccagGCCUCCcGGGUuuccgggUGCCCagGCCu -3'
miRNA:   3'- -ACGuuaaUGGAGGuCCUA-------AUGGG--UGG- -5'
17358 3' -49.3 NC_004367.1 + 141559 0.66 0.997007
Target:  5'- cGCGAccgccccgGCCacgcccacccccgcUCCAGGGgucccgcGCCCACCg -3'
miRNA:   3'- aCGUUaa------UGG--------------AGGUCCUaa-----UGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 141231 0.66 0.997007
Target:  5'- cGCGAccgccccgGCCacgcccacccccgcUCCAGGGgucccgcGCCCACCg -3'
miRNA:   3'- aCGUUaa------UGG--------------AGGUCCUaa-----UGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 141886 0.66 0.997007
Target:  5'- cGCGAccgccccgGCCacgcccacccccgcUCCAGGGgucccgcGCCCACCg -3'
miRNA:   3'- aCGUUaa------UGG--------------AGGUCCUaa-----UGGGUGG- -5'
17358 3' -49.3 NC_004367.1 + 140576 0.66 0.997007
Target:  5'- cGCGAccgccccgGCCacgcccacccccgcUCCAGGGgucccgcGCCCACCg -3'
miRNA:   3'- aCGUUaa------UGG--------------AGGUCCUaa-----UGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.