Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17358 | 3' | -49.3 | NC_004367.1 | + | 122468 | 0.66 | 0.99834 |
Target: 5'- aGCA---GCCUUCAcGGA--ACCCGCg -3' miRNA: 3'- aCGUuaaUGGAGGU-CCUaaUGGGUGg -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 125377 | 0.66 | 0.99834 |
Target: 5'- aGCA---GCCUUCAcGGA--ACCCGCg -3' miRNA: 3'- aCGUuaaUGGAGGU-CCUaaUGGGUGg -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 128286 | 0.66 | 0.99834 |
Target: 5'- aGCA---GCCUUCAcGGA--ACCCGCg -3' miRNA: 3'- aCGUuaaUGGAGGU-CCUaaUGGGUGg -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 47012 | 0.66 | 0.99834 |
Target: 5'- aGCAGUaauguuugUAUCUCCucAGGAU--CCCACg -3' miRNA: 3'- aCGUUA--------AUGGAGG--UCCUAauGGGUGg -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 97043 | 0.66 | 0.998276 |
Target: 5'- gGCAGgugagcccuCCUCCAGauaagccuCCCACCg -3' miRNA: 3'- aCGUUaau------GGAGGUCcuaau---GGGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 117236 | 0.66 | 0.998003 |
Target: 5'- gUGCccagGCCUCCcGGGUuuuccgggUGCCCagGCCu -3' miRNA: 3'- -ACGuuaaUGGAGGuCCUA--------AUGGG--UGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 117288 | 0.66 | 0.998003 |
Target: 5'- gUGCccagGCCUCCcGGGUuuuccgggUGCCCagGCCu -3' miRNA: 3'- -ACGuuaaUGGAGGuCCUA--------AUGGG--UGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 117184 | 0.66 | 0.998003 |
Target: 5'- gUGCccagGCCUCCcGGGUuuuccgggUGCCCagGCCu -3' miRNA: 3'- -ACGuuaaUGGAGGuCCUA--------AUGGG--UGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 117132 | 0.66 | 0.998003 |
Target: 5'- gUGCccagGCCUCCcGGGUuuuccgggUGCCCagGCCu -3' miRNA: 3'- -ACGuuaaUGGAGGuCCUA--------AUGGG--UGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 117080 | 0.66 | 0.998003 |
Target: 5'- gUGCccagGCCUCCcGGGUuuuccgggUGCCCagGCCu -3' miRNA: 3'- -ACGuuaaUGGAGGuCCUA--------AUGGG--UGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 117028 | 0.66 | 0.998003 |
Target: 5'- gUGCccagGCCUCCcGGGUuuuccgggUGCCCagGCCu -3' miRNA: 3'- -ACGuuaaUGGAGGuCCUA--------AUGGG--UGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 116976 | 0.66 | 0.998003 |
Target: 5'- gUGCccagGCCUCCcGGGUuuuccgggUGCCCagGCCu -3' miRNA: 3'- -ACGuuaaUGGAGGuCCUA--------AUGGG--UGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 116924 | 0.66 | 0.998003 |
Target: 5'- gUGCccagGCCUCCcGGGUuuuccgggUGCCCagGCCu -3' miRNA: 3'- -ACGuuaaUGGAGGuCCUA--------AUGGG--UGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 104568 | 0.66 | 0.997611 |
Target: 5'- -----aUACCauu-GGAUUACCCGCCa -3' miRNA: 3'- acguuaAUGGagguCCUAAUGGGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 116719 | 0.66 | 0.997568 |
Target: 5'- gUGCccagGCCUCCcGGGUuuccgggUGCCCagGCCu -3' miRNA: 3'- -ACGuuaaUGGAGGuCCUA-------AUGGG--UGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 116872 | 0.66 | 0.997568 |
Target: 5'- gUGCccagGCCUCCcGGGUuuccgggUGCCCagGCCu -3' miRNA: 3'- -ACGuuaaUGGAGGuCCUA-------AUGGG--UGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 141559 | 0.66 | 0.997007 |
Target: 5'- cGCGAccgccccgGCCacgcccacccccgcUCCAGGGgucccgcGCCCACCg -3' miRNA: 3'- aCGUUaa------UGG--------------AGGUCCUaa-----UGGGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 141231 | 0.66 | 0.997007 |
Target: 5'- cGCGAccgccccgGCCacgcccacccccgcUCCAGGGgucccgcGCCCACCg -3' miRNA: 3'- aCGUUaa------UGG--------------AGGUCCUaa-----UGGGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 141886 | 0.66 | 0.997007 |
Target: 5'- cGCGAccgccccgGCCacgcccacccccgcUCCAGGGgucccgcGCCCACCg -3' miRNA: 3'- aCGUUaa------UGG--------------AGGUCCUaa-----UGGGUGG- -5' |
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17358 | 3' | -49.3 | NC_004367.1 | + | 140576 | 0.66 | 0.997007 |
Target: 5'- cGCGAccgccccgGCCacgcccacccccgcUCCAGGGgucccgcGCCCACCg -3' miRNA: 3'- aCGUUaa------UGG--------------AGGUCCUaa-----UGGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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