miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17366 5' -56.5 NC_004367.1 + 129804 0.71 0.603893
Target:  5'- cGCCUCCCGGucAGgggguccagcccCUGG-CCCGGAGg -3'
miRNA:   3'- uCGGAGGGUCuuUU------------GAUCgGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 116662 0.69 0.700127
Target:  5'- aGGCCUCCCGGcccauaccgcgguccAGAACcgcccAGCuCCUGGAGc -3'
miRNA:   3'- -UCGGAGGGUC---------------UUUUGa----UCG-GGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 102752 0.7 0.68594
Target:  5'- uGCCUUCCAGAuccgccacccauGGA--GGCUCCGGAGc -3'
miRNA:   3'- uCGGAGGGUCU------------UUUgaUCGGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 121034 0.71 0.624435
Target:  5'- cGCCggCCUAGucc-CUAGCCUCGGGGu -3'
miRNA:   3'- uCGGa-GGGUCuuuuGAUCGGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 123943 0.71 0.624435
Target:  5'- cGCCggCCUAGucc-CUAGCCUCGGGGu -3'
miRNA:   3'- uCGGa-GGGUCuuuuGAUCGGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 126852 0.71 0.624435
Target:  5'- cGCCggCCUAGucc-CUAGCCUCGGGGu -3'
miRNA:   3'- uCGGa-GGGUCuuuuGAUCGGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 121077 0.71 0.603893
Target:  5'- cGCCUCCCGGucAGgggguccagcccCUGG-CCCGGAGg -3'
miRNA:   3'- uCGGAGGGUCuuUU------------GAUCgGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 123986 0.71 0.603893
Target:  5'- cGCCUCCCGGucAGgggguccagcccCUGG-CCCGGAGg -3'
miRNA:   3'- uCGGAGGGUCuuUU------------GAUCgGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 126895 0.71 0.603893
Target:  5'- cGCCUCCCGGucAGgggguccagcccCUGG-CCCGGAGg -3'
miRNA:   3'- uCGGAGGGUCuuUU------------GAUCgGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 129999 0.69 0.735046
Target:  5'- cGCCUCCgGGccaGGGGCUGGaCCCCcugaccgGGAGg -3'
miRNA:   3'- uCGGAGGgUC---UUUUGAUC-GGGG-------CCUC- -5'
17366 5' -56.5 NC_004367.1 + 127090 0.69 0.735046
Target:  5'- cGCCUCCgGGccaGGGGCUGGaCCCCcugaccgGGAGg -3'
miRNA:   3'- uCGGAGGgUC---UUUUGAUC-GGGG-------CCUC- -5'
17366 5' -56.5 NC_004367.1 + 124181 0.69 0.735046
Target:  5'- cGCCUCCgGGccaGGGGCUGGaCCCCcugaccgGGAGg -3'
miRNA:   3'- uCGGAGGgUC---UUUUGAUC-GGGG-------CCUC- -5'
17366 5' -56.5 NC_004367.1 + 147711 0.66 0.875469
Target:  5'- uGGCCUCCaccgccgaGGAAGGCguccCCCCGGc- -3'
miRNA:   3'- -UCGGAGGg-------UCUUUUGauc-GGGGCCuc -5'
17366 5' -56.5 NC_004367.1 + 14664 0.66 0.868108
Target:  5'- cAGCUUUCUAGcAGACUGGCCa-GGAa -3'
miRNA:   3'- -UCGGAGGGUCuUUUGAUCGGggCCUc -5'
17366 5' -56.5 NC_004367.1 + 146728 0.66 0.868108
Target:  5'- uGGCCUCCacccgccgaGGAAGGCgucCCCCGGc- -3'
miRNA:   3'- -UCGGAGGg--------UCUUUUGaucGGGGCCuc -5'
17366 5' -56.5 NC_004367.1 + 63468 0.67 0.828216
Target:  5'- uGGCgUCaCAGuc-ACUGGCCCUGGAu -3'
miRNA:   3'- -UCGgAGgGUCuuuUGAUCGGGGCCUc -5'
17366 5' -56.5 NC_004367.1 + 129761 0.67 0.819667
Target:  5'- cGCCggCCUAGucc-CUAGCCUCGGGu -3'
miRNA:   3'- uCGGa-GGGUCuuuuGAUCGGGGCCUc -5'
17366 5' -56.5 NC_004367.1 + 137593 0.68 0.765063
Target:  5'- uGGCgaCCCGGAGuuuCUccGGCCUCGGAa -3'
miRNA:   3'- -UCGgaGGGUCUUuu-GA--UCGGGGCCUc -5'
17366 5' -56.5 NC_004367.1 + 64541 0.69 0.745811
Target:  5'- aGGCauguaUUCAGAAAcGCUGGCCCCGaGAGg -3'
miRNA:   3'- -UCGga---GGGUCUUU-UGAUCGGGGC-CUC- -5'
17366 5' -56.5 NC_004367.1 + 121272 0.69 0.735046
Target:  5'- cGCCUCCgGGccaGGGGCUGGaCCCCcugaccgGGAGg -3'
miRNA:   3'- uCGGAGGgUC---UUUUGAUC-GGGG-------CCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.