miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17473 3' -46.8 NC_004456.1 + 8490 0.66 0.986712
Target:  5'- -cAGUCCGCUGucuguuGCGaaaGCAgcGCCaCCa -3'
miRNA:   3'- guUCAGGUGAUuu----UGC---UGUuuCGG-GG- -5'
17473 3' -46.8 NC_004456.1 + 42020 0.66 0.984754
Target:  5'- aAGGUCUcgcaacCUGAuACGGuuCAAGGCCCUg -3'
miRNA:   3'- gUUCAGGu-----GAUUuUGCU--GUUUCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 15547 0.66 0.984754
Target:  5'- ----cCCGC-AGAGCGGCAAAGgCCa -3'
miRNA:   3'- guucaGGUGaUUUUGCUGUUUCgGGg -5'
17473 3' -46.8 NC_004456.1 + 9326 0.66 0.984754
Target:  5'- -uGGUgCGCUAcuGCGAaAAAGCCUUg -3'
miRNA:   3'- guUCAgGUGAUuuUGCUgUUUCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 24217 0.66 0.982583
Target:  5'- --cGUCCccGCUGAAAUcacaucaacuguGGCAucGGCCCCc -3'
miRNA:   3'- guuCAGG--UGAUUUUG------------CUGUu-UCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 28175 0.66 0.982583
Target:  5'- uCGAGUCgGCaaccgcGACGACAGuuggcggcGGCCUCu -3'
miRNA:   3'- -GUUCAGgUGauu---UUGCUGUU--------UCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 5490 0.66 0.977554
Target:  5'- aAAG-CCGCaAAAGCGGCcuucacagucauAGAGUCCCc -3'
miRNA:   3'- gUUCaGGUGaUUUUGCUG------------UUUCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 32881 0.66 0.977554
Target:  5'- uCAAGcUCCAagccauCGACAAAaugagcGCCCCg -3'
miRNA:   3'- -GUUC-AGGUgauuuuGCUGUUU------CGGGG- -5'
17473 3' -46.8 NC_004456.1 + 26429 0.67 0.974672
Target:  5'- aAAGUCUAUcucuGCGAUAGagGGCCCa -3'
miRNA:   3'- gUUCAGGUGauuuUGCUGUU--UCGGGg -5'
17473 3' -46.8 NC_004456.1 + 6364 0.67 0.968116
Target:  5'- gCAAGUCUACcaua--GACAgcGCCCUu -3'
miRNA:   3'- -GUUCAGGUGauuuugCUGUuuCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 18533 0.68 0.956154
Target:  5'- gAGGUCCAgUcguuuuACGGCuugcAAGCCCUg -3'
miRNA:   3'- gUUCAGGUgAuuu---UGCUGu---UUCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 16441 0.68 0.951567
Target:  5'- aAAGUCCAgcGAGACGAUGAcaCCCUg -3'
miRNA:   3'- gUUCAGGUgaUUUUGCUGUUucGGGG- -5'
17473 3' -46.8 NC_004456.1 + 11926 0.68 0.951091
Target:  5'- gGGGUCCGCUGguuccuuggugugGAGCGAau-GGCCaCUa -3'
miRNA:   3'- gUUCAGGUGAU-------------UUUGCUguuUCGG-GG- -5'
17473 3' -46.8 NC_004456.1 + 38092 0.68 0.946669
Target:  5'- uCAGGUUgAUU---ACGAUAAAGaCCCCg -3'
miRNA:   3'- -GUUCAGgUGAuuuUGCUGUUUC-GGGG- -5'
17473 3' -46.8 NC_004456.1 + 19932 0.68 0.946669
Target:  5'- ----aUCACUGGAACGAU--GGCCCa -3'
miRNA:   3'- guucaGGUGAUUUUGCUGuuUCGGGg -5'
17473 3' -46.8 NC_004456.1 + 19501 0.68 0.941455
Target:  5'- gCGGGUCCACUucuucccAGCGAgGAGuGCgCCa -3'
miRNA:   3'- -GUUCAGGUGAuu-----UUGCUgUUU-CGgGG- -5'
17473 3' -46.8 NC_004456.1 + 12404 0.68 0.940917
Target:  5'- aAAG-CCGcCUAGAGCGGuuuuuugcguuucCAGGGCCCUg -3'
miRNA:   3'- gUUCaGGU-GAUUUUGCU-------------GUUUCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 25152 0.69 0.929465
Target:  5'- -cAGUUCGCgauAAGCGaagguuuGCAAGGCUCCa -3'
miRNA:   3'- guUCAGGUGau-UUUGC-------UGUUUCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 34030 0.69 0.923891
Target:  5'- --cGUCUugGCUAGAACaucuGACAGcuGCCCCa -3'
miRNA:   3'- guuCAGG--UGAUUUUG----CUGUUu-CGGGG- -5'
17473 3' -46.8 NC_004456.1 + 15808 0.7 0.903428
Target:  5'- gAAGUCgACUAcgaAGugGAgcGAGCCCUg -3'
miRNA:   3'- gUUCAGgUGAU---UUugCUguUUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.