miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
176 5' -65.9 AC_000007.1 + 26857 0.66 0.16924
Target:  5'- cGCUGCGUcugGCGCCCAacgaacccguaucGaCCCGCGaGCUu -3'
miRNA:   3'- aCGGCGCG---UGUGGGU-------------C-GGGCGC-CGGu -5'
176 5' -65.9 AC_000007.1 + 24629 0.66 0.160919
Target:  5'- cUGCCGUGCcaACCgCAGCCgaGCGGaCAa -3'
miRNA:   3'- -ACGGCGCGugUGG-GUCGGg-CGCCgGU- -5'
176 5' -65.9 AC_000007.1 + 23899 1.07 0.000066
Target:  5'- gUGCCGCGCACACCCAGCCCGCGGCCAu -3'
miRNA:   3'- -ACGGCGCGUGUGGGUCGGGCGCCGGU- -5'
176 5' -65.9 AC_000007.1 + 23234 0.66 0.156273
Target:  5'- aGCgGUGCagccacaACGCgCAGCCCGUGGgCu -3'
miRNA:   3'- aCGgCGCG-------UGUGgGUCGGGCGCCgGu -5'
176 5' -65.9 AC_000007.1 + 23081 0.7 0.079078
Target:  5'- gUGCUGCGUGCaugACgCGGCCUGUccGGCCAa -3'
miRNA:   3'- -ACGGCGCGUG---UGgGUCGGGCG--CCGGU- -5'
176 5' -65.9 AC_000007.1 + 21684 0.68 0.113277
Target:  5'- -cCUGCGCACGCCCuucucGGCCgGCaacGCCAc -3'
miRNA:   3'- acGGCGCGUGUGGG-----UCGGgCGc--CGGU- -5'
176 5' -65.9 AC_000007.1 + 21639 0.67 0.133365
Target:  5'- gGuCCGUGUGCACCagccGCaCCGCGGCg- -3'
miRNA:   3'- aC-GGCGCGUGUGGgu--CG-GGCGCCGgu -5'
176 5' -65.9 AC_000007.1 + 18958 0.7 0.081313
Target:  5'- gUGgCGCGgGCAaacugcaCCAGCCCGgGGCuCAg -3'
miRNA:   3'- -ACgGCGCgUGUg------GGUCGGGCgCCG-GU- -5'
176 5' -65.9 AC_000007.1 + 18601 0.71 0.068755
Target:  5'- aGCCGCGCgucccuGCGCCguGCCgccaGCGGuCCGc -3'
miRNA:   3'- aCGGCGCG------UGUGGguCGGg---CGCC-GGU- -5'
176 5' -65.9 AC_000007.1 + 17838 0.67 0.129803
Target:  5'- cGCCGCgGCgauugGCGCCguGCCCggaauugcauccGUGGCCu -3'
miRNA:   3'- aCGGCG-CG-----UGUGGguCGGG------------CGCCGGu -5'
176 5' -65.9 AC_000007.1 + 17815 0.68 0.105191
Target:  5'- cGCCGCcggugguGCGCACgacgcaugccgcccgUCAGgCCGUGGCCGg -3'
miRNA:   3'- aCGGCG-------CGUGUG---------------GGUCgGGCGCCGGU- -5'
176 5' -65.9 AC_000007.1 + 17758 0.68 0.110216
Target:  5'- cGUCGUGCGCACCa--CCgGCGGCg- -3'
miRNA:   3'- aCGGCGCGUGUGGgucGGgCGCCGgu -5'
176 5' -65.9 AC_000007.1 + 17518 0.69 0.098734
Target:  5'- cGCCGuCGC-CGuCgCCAGCCCGUgcuGGCCc -3'
miRNA:   3'- aCGGC-GCGuGU-G-GGUCGGGCG---CCGGu -5'
176 5' -65.9 AC_000007.1 + 17330 0.67 0.133365
Target:  5'- gGCCGCaGCGgcCGCCU-GCaCCGCGGCa- -3'
miRNA:   3'- aCGGCG-CGU--GUGGGuCG-GGCGCCGgu -5'
176 5' -65.9 AC_000007.1 + 17267 0.69 0.096045
Target:  5'- aUGCCGCgGUGCAggCGGCCgcUGCGGCCGc -3'
miRNA:   3'- -ACGGCG-CGUGUggGUCGG--GCGCCGGU- -5'
176 5' -65.9 AC_000007.1 + 17204 0.67 0.126329
Target:  5'- gGUC-UGCACGCCCAGuCCCG-GuGCCAc -3'
miRNA:   3'- aCGGcGCGUGUGGGUC-GGGCgC-CGGU- -5'
176 5' -65.9 AC_000007.1 + 16450 0.67 0.122941
Target:  5'- gGCCGCuaaccgagucGCGCACCCAGUacaCGuuGCCc -3'
miRNA:   3'- aCGGCG----------CGUGUGGGUCGg--GCgcCGGu -5'
176 5' -65.9 AC_000007.1 + 16421 0.67 0.133365
Target:  5'- gUGcCCGUGCGCACCCGcccCCCGCGcaaCUAg -3'
miRNA:   3'- -AC-GGCGCGUGUGGGUc--GGGCGCc--GGU- -5'
176 5' -65.9 AC_000007.1 + 16330 0.68 0.119637
Target:  5'- gGCCGC-CGCAgC-AG-CCGCGGCCAu -3'
miRNA:   3'- aCGGCGcGUGUgGgUCgGGCGCCGGU- -5'
176 5' -65.9 AC_000007.1 + 16308 0.7 0.079078
Target:  5'- gGCC-CGCAUGgCC-GCCCGuCGGCCGg -3'
miRNA:   3'- aCGGcGCGUGUgGGuCGGGC-GCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.