Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 17604 | 3' | -46.3 | NC_004466.2 | + | 40700 | 0.67 | 0.988376 |
|
Target: 5'- gGGUccgcGACACC-UGGGGCAaGCuGuGCCGGg -3' miRNA: 3'- -CCA----UUGUGGuAUUCUGU-UGuC-UGGCC- -5' |
|||||||
| 17604 | 3' | -46.3 | NC_004466.2 | + | 44671 | 0.66 | 0.989939 |
|
Target: 5'- cGUAuCGCCGUGAucCAGC-GACUGGa -3' miRNA: 3'- cCAUuGUGGUAUUcuGUUGuCUGGCC- -5' |
|||||||
| 17604 | 3' | -46.3 | NC_004466.2 | + | 33590 | 0.66 | 0.991332 |
|
Target: 5'- cGU-ACACCGUAAGAUcACGGuuCCGu -3' miRNA: 3'- cCAuUGUGGUAUUCUGuUGUCu-GGCc -5' |
|||||||
| 17604 | 3' | -46.3 | NC_004466.2 | + | 2252 | 0.66 | 0.991332 |
|
Target: 5'- gGGUAuuCGCCucAAGGCAGCccaggauauccuGGACCGa -3' miRNA: 3'- -CCAUu-GUGGuaUUCUGUUG------------UCUGGCc -5' |
|||||||
| 17604 | 3' | -46.3 | NC_004466.2 | + | 88 | 0.66 | 0.992214 |
|
Target: 5'- aGGacAgACCAUAAcGACGACacuaacgcggaaagGGGCCGGc -3' miRNA: 3'- -CCauUgUGGUAUU-CUGUUG--------------UCUGGCC- -5' |
|||||||
| 17604 | 3' | -46.3 | NC_004466.2 | + | 39932 | 0.66 | 0.992452 |
|
Target: 5'- cGGUAACACC----GGCGGCucccuugGGugCGGu -3' miRNA: 3'- -CCAUUGUGGuauuCUGUUG-------UCugGCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home