Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17604 | 3' | -46.3 | NC_004466.2 | + | 37023 | 0.76 | 0.664091 |
Target: 5'- cGGUAcucgACACCGUAGGGCuuguagcGGCAGgcACCGGc -3' miRNA: 3'- -CCAU----UGUGGUAUUCUG-------UUGUC--UGGCC- -5' |
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17604 | 3' | -46.3 | NC_004466.2 | + | 37414 | 0.68 | 0.967233 |
Target: 5'- uGGUGAUGCCGU-GGugGaauugcucgaaggaGCuGGCCGGa -3' miRNA: 3'- -CCAUUGUGGUAuUCugU--------------UGuCUGGCC- -5' |
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17604 | 3' | -46.3 | NC_004466.2 | + | 39932 | 0.66 | 0.992452 |
Target: 5'- cGGUAACACC----GGCGGCucccuugGGugCGGu -3' miRNA: 3'- -CCAUUGUGGuauuCUGUUG-------UCugGCC- -5' |
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17604 | 3' | -46.3 | NC_004466.2 | + | 40151 | 0.81 | 0.418676 |
Target: 5'- cGGUGACGCCAgaagugaGGGGCGACAuGCUGGg -3' miRNA: 3'- -CCAUUGUGGUa------UUCUGUUGUcUGGCC- -5' |
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17604 | 3' | -46.3 | NC_004466.2 | + | 40700 | 0.67 | 0.988376 |
Target: 5'- gGGUccgcGACACC-UGGGGCAaGCuGuGCCGGg -3' miRNA: 3'- -CCA----UUGUGGuAUUCUGU-UGuC-UGGCC- -5' |
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17604 | 3' | -46.3 | NC_004466.2 | + | 44671 | 0.66 | 0.989939 |
Target: 5'- cGUAuCGCCGUGAucCAGC-GACUGGa -3' miRNA: 3'- cCAUuGUGGUAUUcuGUUGuCUGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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