miRNA display CGI


Results 21 - 26 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17604 3' -46.3 NC_004466.2 + 37023 0.76 0.664091
Target:  5'- cGGUAcucgACACCGUAGGGCuuguagcGGCAGgcACCGGc -3'
miRNA:   3'- -CCAU----UGUGGUAUUCUG-------UUGUC--UGGCC- -5'
17604 3' -46.3 NC_004466.2 + 37414 0.68 0.967233
Target:  5'- uGGUGAUGCCGU-GGugGaauugcucgaaggaGCuGGCCGGa -3'
miRNA:   3'- -CCAUUGUGGUAuUCugU--------------UGuCUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 39932 0.66 0.992452
Target:  5'- cGGUAACACC----GGCGGCucccuugGGugCGGu -3'
miRNA:   3'- -CCAUUGUGGuauuCUGUUG-------UCugGCC- -5'
17604 3' -46.3 NC_004466.2 + 40151 0.81 0.418676
Target:  5'- cGGUGACGCCAgaagugaGGGGCGACAuGCUGGg -3'
miRNA:   3'- -CCAUUGUGGUa------UUCUGUUGUcUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 40700 0.67 0.988376
Target:  5'- gGGUccgcGACACC-UGGGGCAaGCuGuGCCGGg -3'
miRNA:   3'- -CCA----UUGUGGuAUUCUGU-UGuC-UGGCC- -5'
17604 3' -46.3 NC_004466.2 + 44671 0.66 0.989939
Target:  5'- cGUAuCGCCGUGAucCAGC-GACUGGa -3'
miRNA:   3'- cCAUuGUGGUAUUcuGUUGuCUGGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.