miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18022 3' -54.1 NC_004665.1 + 1269 0.66 0.643653
Target:  5'- -uCCAUCugCcGUUCCAuuGCCUugugGAACCg -3'
miRNA:   3'- guGGUAGugGuCGAGGU--UGGG----CUUGG- -5'
18022 3' -54.1 NC_004665.1 + 2457 0.66 0.666389
Target:  5'- uGCC--CACCGGCUCaccuuuggCAGCCUGAggauGCCu -3'
miRNA:   3'- gUGGuaGUGGUCGAG--------GUUGGGCU----UGG- -5'
18022 3' -54.1 NC_004665.1 + 3131 0.69 0.50913
Target:  5'- aGCCAUgUAgCGGCUCgCuucGCCCGGACUg -3'
miRNA:   3'- gUGGUA-GUgGUCGAG-Gu--UGGGCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 3981 0.67 0.620871
Target:  5'- gCGCUcUCACgGGUUCCcACCUcGACCg -3'
miRNA:   3'- -GUGGuAGUGgUCGAGGuUGGGcUUGG- -5'
18022 3' -54.1 NC_004665.1 + 4144 0.76 0.19696
Target:  5'- uCGCCGcUACCAGUUCCGugCUGGACa -3'
miRNA:   3'- -GUGGUaGUGGUCGAGGUugGGCUUGg -5'
18022 3' -54.1 NC_004665.1 + 4199 0.68 0.519995
Target:  5'- gACCAUCGgUgaGGCUgucaCCAccACCCGAGCUg -3'
miRNA:   3'- gUGGUAGUgG--UCGA----GGU--UGGGCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 4303 0.67 0.60949
Target:  5'- aGCgGUugucCAUCAGCUCCAGCuuGucguAGCCa -3'
miRNA:   3'- gUGgUA----GUGGUCGAGGUUGggC----UUGG- -5'
18022 3' -54.1 NC_004665.1 + 7705 0.71 0.38781
Target:  5'- uGCCAUCGCUggcGGUUCCAAgCUGAAgguCCg -3'
miRNA:   3'- gUGGUAGUGG---UCGAGGUUgGGCUU---GG- -5'
18022 3' -54.1 NC_004665.1 + 8027 0.73 0.302341
Target:  5'- gCACCcuUCggACCAGCguaagCCAucagaagucGCCCGAGCCg -3'
miRNA:   3'- -GUGGu-AG--UGGUCGa----GGU---------UGGGCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 9129 0.74 0.244986
Target:  5'- gUACCA-CACCGGgUCUGACUCGGAUCg -3'
miRNA:   3'- -GUGGUaGUGGUCgAGGUUGGGCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 9263 0.73 0.294639
Target:  5'- uCGCCAUCACUGGCaUCCAACgUGGcAUCg -3'
miRNA:   3'- -GUGGUAGUGGUCG-AGGUUGgGCU-UGG- -5'
18022 3' -54.1 NC_004665.1 + 9627 0.66 0.666389
Target:  5'- --aCAUCGCCAaCUCCAAaCUGAGCg -3'
miRNA:   3'- gugGUAGUGGUcGAGGUUgGGCUUGg -5'
18022 3' -54.1 NC_004665.1 + 10246 0.66 0.665255
Target:  5'- aCGCUcuguucgGUCGCCAGCUCUggUCUGGu-- -3'
miRNA:   3'- -GUGG-------UAGUGGUCGAGGuuGGGCUugg -5'
18022 3' -54.1 NC_004665.1 + 14522 0.74 0.244986
Target:  5'- aCACCAUCACC-GCUCugaaggCAACCCGugaggaAGCCc -3'
miRNA:   3'- -GUGGUAGUGGuCGAG------GUUGGGC------UUGG- -5'
18022 3' -54.1 NC_004665.1 + 15623 0.71 0.360569
Target:  5'- uGCCucgucguucuUCACCAGCUCCA-UCUGggUCa -3'
miRNA:   3'- gUGGu---------AGUGGUCGAGGUuGGGCuuGG- -5'
18022 3' -54.1 NC_004665.1 + 17982 0.7 0.436109
Target:  5'- gACCu---CCAGCUCCuGCUCGGGCUu -3'
miRNA:   3'- gUGGuaguGGUCGAGGuUGGGCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 19254 0.76 0.181179
Target:  5'- uCACCAUCACCAGCUUCGuugucagugACCuCGAcAUCg -3'
miRNA:   3'- -GUGGUAGUGGUCGAGGU---------UGG-GCU-UGG- -5'
18022 3' -54.1 NC_004665.1 + 19647 0.67 0.632262
Target:  5'- gACCAUCAUCAaCUUgGGCauggCGAGCCa -3'
miRNA:   3'- gUGGUAGUGGUcGAGgUUGg---GCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 19915 0.71 0.396242
Target:  5'- uGCC-UUACCAGCUCgAagcgcccACUCGGGCCu -3'
miRNA:   3'- gUGGuAGUGGUCGAGgU-------UGGGCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 20416 0.66 0.688988
Target:  5'- gCACCGUCAgCGGCgauggCCAGgCUucACCc -3'
miRNA:   3'- -GUGGUAGUgGUCGa----GGUUgGGcuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.