miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18022 3' -54.1 NC_004665.1 + 36286 0.66 0.643653
Target:  5'- aGCCuccugUACCAGCUC--ACUCGGAUCa -3'
miRNA:   3'- gUGGua---GUGGUCGAGguUGGGCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 35645 0.66 0.655032
Target:  5'- gGCUucgCACuuCAGUUCaugcuCAACCCGAACCu -3'
miRNA:   3'- gUGGua-GUG--GUCGAG-----GUUGGGCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 35600 0.66 0.677711
Target:  5'- aACCAUCugCcuguAGCUCagCAGCCagcauagGAGCCa -3'
miRNA:   3'- gUGGUAGugG----UCGAG--GUUGGg------CUUGG- -5'
18022 3' -54.1 NC_004665.1 + 34640 0.67 0.598131
Target:  5'- aCGCgAUCAgCAGaugCCuuGCUCGAACCg -3'
miRNA:   3'- -GUGgUAGUgGUCga-GGu-UGGGCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 34254 0.76 0.176173
Target:  5'- uCACCAUCGCCaAGCUgaAGCCCGAugaguCCc -3'
miRNA:   3'- -GUGGUAGUGG-UCGAggUUGGGCUu----GG- -5'
18022 3' -54.1 NC_004665.1 + 34017 0.73 0.282636
Target:  5'- uGCCAcuucggCACCAGCUCCAgcggcgauaggggcaGCUCGcACCa -3'
miRNA:   3'- gUGGUa-----GUGGUCGAGGU---------------UGGGCuUGG- -5'
18022 3' -54.1 NC_004665.1 + 33511 0.66 0.676581
Target:  5'- cCGCCGUUguuACCGGaaCCGaggcagcGCCaCGAACCg -3'
miRNA:   3'- -GUGGUAG---UGGUCgaGGU-------UGG-GCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 33342 0.68 0.575515
Target:  5'- aACCGgu-CUGGUUCCAACCUuGGGCCu -3'
miRNA:   3'- gUGGUaguGGUCGAGGUUGGG-CUUGG- -5'
18022 3' -54.1 NC_004665.1 + 33248 0.68 0.564277
Target:  5'- aGCCAgagcgCACCAGCaacCCGGCCagcguugugGAACCc -3'
miRNA:   3'- gUGGUa----GUGGUCGa--GGUUGGg--------CUUGG- -5'
18022 3' -54.1 NC_004665.1 + 32204 0.66 0.666389
Target:  5'- gACUcgCACUGGCagCCGauGCCUGAGCUu -3'
miRNA:   3'- gUGGuaGUGGUCGa-GGU--UGGGCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 29759 0.67 0.620871
Target:  5'- aCGCCA--GCCAGCUC-GACuuGAugCc -3'
miRNA:   3'- -GUGGUagUGGUCGAGgUUGggCUugG- -5'
18022 3' -54.1 NC_004665.1 + 29461 0.69 0.498363
Target:  5'- aCGCUc-CAUCAGggCCAGCCuCGAACCa -3'
miRNA:   3'- -GUGGuaGUGGUCgaGGUUGG-GCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 29286 0.66 0.655032
Target:  5'- gCACCGUgGaacggaaCAGCUUCGAgCCGAuguCCa -3'
miRNA:   3'- -GUGGUAgUg------GUCGAGGUUgGGCUu--GG- -5'
18022 3' -54.1 NC_004665.1 + 28429 0.68 0.519995
Target:  5'- gCACCAgcgaUGCCAGCggucaguugaCCAGCCC-AGCCa -3'
miRNA:   3'- -GUGGUa---GUGGUCGa---------GGUUGGGcUUGG- -5'
18022 3' -54.1 NC_004665.1 + 27529 0.72 0.35179
Target:  5'- -uUCAUCGaguCCAGCUUCAACCCuGAcGCCa -3'
miRNA:   3'- guGGUAGU---GGUCGAGGUUGGG-CU-UGG- -5'
18022 3' -54.1 NC_004665.1 + 24744 0.68 0.553098
Target:  5'- --aCAUgGCCAaugCCAACCUGAACCu -3'
miRNA:   3'- gugGUAgUGGUcgaGGUUGGGCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 24012 1.11 0.00063
Target:  5'- uCACCAUCACCAGCUCCAACCCGAACCc -3'
miRNA:   3'- -GUGGUAGUGGUCGAGGUUGGGCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 23760 0.73 0.302341
Target:  5'- uCACCAucugcUCACCAGCUCgGuuGCCCacGAACg -3'
miRNA:   3'- -GUGGU-----AGUGGUCGAGgU--UGGG--CUUGg -5'
18022 3' -54.1 NC_004665.1 + 22766 0.67 0.620871
Target:  5'- uCAUCGUCACCAGCguugcgUCCAuCCCa---- -3'
miRNA:   3'- -GUGGUAGUGGUCG------AGGUuGGGcuugg -5'
18022 3' -54.1 NC_004665.1 + 20905 0.68 0.553098
Target:  5'- gCGCuCGUCGCCcugAGUUCCAAgCUGA-CCa -3'
miRNA:   3'- -GUG-GUAGUGG---UCGAGGUUgGGCUuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.