miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18022 3' -54.1 NC_004665.1 + 24012 1.11 0.00063
Target:  5'- uCACCAUCACCAGCUCCAACCCGAACCc -3'
miRNA:   3'- -GUGGUAGUGGUCGAGGUUGGGCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 9627 0.66 0.666389
Target:  5'- --aCAUCGCCAaCUCCAAaCUGAGCg -3'
miRNA:   3'- gugGUAGUGGUcGAGGUUgGGCUUGg -5'
18022 3' -54.1 NC_004665.1 + 10246 0.66 0.665255
Target:  5'- aCGCUcuguucgGUCGCCAGCUCUggUCUGGu-- -3'
miRNA:   3'- -GUGG-------UAGUGGUCGAGGuuGGGCUugg -5'
18022 3' -54.1 NC_004665.1 + 35645 0.66 0.655032
Target:  5'- gGCUucgCACuuCAGUUCaugcuCAACCCGAACCu -3'
miRNA:   3'- gUGGua-GUG--GUCGAG-----GUUGGGCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 36286 0.66 0.643653
Target:  5'- aGCCuccugUACCAGCUC--ACUCGGAUCa -3'
miRNA:   3'- gUGGua---GUGGUCGAGguUGGGCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 19647 0.67 0.632262
Target:  5'- gACCAUCAUCAaCUUgGGCauggCGAGCCa -3'
miRNA:   3'- gUGGUAGUGGUcGAGgUUGg---GCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 33342 0.68 0.575515
Target:  5'- aACCGgu-CUGGUUCCAACCUuGGGCCu -3'
miRNA:   3'- gUGGUaguGGUCGAGGUUGGG-CUUGG- -5'
18022 3' -54.1 NC_004665.1 + 20905 0.68 0.553098
Target:  5'- gCGCuCGUCGCCcugAGUUCCAAgCUGA-CCa -3'
miRNA:   3'- -GUG-GUAGUGG---UCGAGGUUgGGCUuGG- -5'
18022 3' -54.1 NC_004665.1 + 24744 0.68 0.553098
Target:  5'- --aCAUgGCCAaugCCAACCUGAACCu -3'
miRNA:   3'- gugGUAgUGGUcgaGGUUGGGCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 4199 0.68 0.519995
Target:  5'- gACCAUCGgUgaGGCUgucaCCAccACCCGAGCUg -3'
miRNA:   3'- gUGGUAGUgG--UCGA----GGU--UGGGCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 34254 0.76 0.176173
Target:  5'- uCACCAUCGCCaAGCUgaAGCCCGAugaguCCc -3'
miRNA:   3'- -GUGGUAGUGG-UCGAggUUGGGCUu----GG- -5'
18022 3' -54.1 NC_004665.1 + 4144 0.76 0.19696
Target:  5'- uCGCCGcUACCAGUUCCGugCUGGACa -3'
miRNA:   3'- -GUGGUaGUGGUCGAGGUugGGCUUGg -5'
18022 3' -54.1 NC_004665.1 + 9129 0.74 0.244986
Target:  5'- gUACCA-CACCGGgUCUGACUCGGAUCg -3'
miRNA:   3'- -GUGGUaGUGGUCgAGGUUGGGCUUGG- -5'
18022 3' -54.1 NC_004665.1 + 14522 0.74 0.244986
Target:  5'- aCACCAUCACC-GCUCugaaggCAACCCGugaggaAGCCc -3'
miRNA:   3'- -GUGGUAGUGGuCGAG------GUUGGGC------UUGG- -5'
18022 3' -54.1 NC_004665.1 + 9263 0.73 0.294639
Target:  5'- uCGCCAUCACUGGCaUCCAACgUGGcAUCg -3'
miRNA:   3'- -GUGGUAGUGGUCG-AGGUUGgGCU-UGG- -5'
18022 3' -54.1 NC_004665.1 + 27529 0.72 0.35179
Target:  5'- -uUCAUCGaguCCAGCUUCAACCCuGAcGCCa -3'
miRNA:   3'- guGGUAGU---GGUCGAGGUUGGG-CU-UGG- -5'
18022 3' -54.1 NC_004665.1 + 7705 0.71 0.38781
Target:  5'- uGCCAUCGCUggcGGUUCCAAgCUGAAgguCCg -3'
miRNA:   3'- gUGGUAGUGG---UCGAGGUUgGGCUU---GG- -5'
18022 3' -54.1 NC_004665.1 + 20416 0.66 0.688988
Target:  5'- gCACCGUCAgCGGCgauggCCAGgCUucACCc -3'
miRNA:   3'- -GUGGUAGUgGUCGa----GGUUgGGcuUGG- -5'
18022 3' -54.1 NC_004665.1 + 34017 0.73 0.282636
Target:  5'- uGCCAcuucggCACCAGCUCCAgcggcgauaggggcaGCUCGcACCa -3'
miRNA:   3'- gUGGUa-----GUGGUCGAGGU---------------UGGGCuUGG- -5'
18022 3' -54.1 NC_004665.1 + 8027 0.73 0.302341
Target:  5'- gCACCcuUCggACCAGCguaagCCAucagaagucGCCCGAGCCg -3'
miRNA:   3'- -GUGGu-AG--UGGUCGa----GGU---------UGGGCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.