Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18022 | 3' | -54.1 | NC_004665.1 | + | 15623 | 0.71 | 0.360569 |
Target: 5'- uGCCucgucguucuUCACCAGCUCCA-UCUGggUCa -3' miRNA: 3'- gUGGu---------AGUGGUCGAGGUuGGGCuuGG- -5' |
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18022 | 3' | -54.1 | NC_004665.1 | + | 29286 | 0.66 | 0.655032 |
Target: 5'- gCACCGUgGaacggaaCAGCUUCGAgCCGAuguCCa -3' miRNA: 3'- -GUGGUAgUg------GUCGAGGUUgGGCUu--GG- -5' |
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18022 | 3' | -54.1 | NC_004665.1 | + | 2457 | 0.66 | 0.666389 |
Target: 5'- uGCC--CACCGGCUCaccuuuggCAGCCUGAggauGCCu -3' miRNA: 3'- gUGGuaGUGGUCGAG--------GUUGGGCU----UGG- -5' |
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18022 | 3' | -54.1 | NC_004665.1 | + | 20416 | 0.66 | 0.688988 |
Target: 5'- gCACCGUCAgCGGCgauggCCAGgCUucACCc -3' miRNA: 3'- -GUGGUAGUgGUCGa----GGUUgGGcuUGG- -5' |
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18022 | 3' | -54.1 | NC_004665.1 | + | 3131 | 0.69 | 0.50913 |
Target: 5'- aGCCAUgUAgCGGCUCgCuucGCCCGGACUg -3' miRNA: 3'- gUGGUA-GUgGUCGAG-Gu--UGGGCUUGG- -5' |
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18022 | 3' | -54.1 | NC_004665.1 | + | 28429 | 0.68 | 0.519995 |
Target: 5'- gCACCAgcgaUGCCAGCggucaguugaCCAGCCC-AGCCa -3' miRNA: 3'- -GUGGUa---GUGGUCGa---------GGUUGGGcUUGG- -5' |
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18022 | 3' | -54.1 | NC_004665.1 | + | 19254 | 0.76 | 0.181179 |
Target: 5'- uCACCAUCACCAGCUUCGuugucagugACCuCGAcAUCg -3' miRNA: 3'- -GUGGUAGUGGUCGAGGU---------UGG-GCU-UGG- -5' |
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18022 | 3' | -54.1 | NC_004665.1 | + | 34017 | 0.73 | 0.282636 |
Target: 5'- uGCCAcuucggCACCAGCUCCAgcggcgauaggggcaGCUCGcACCa -3' miRNA: 3'- gUGGUa-----GUGGUCGAGGU---------------UGGGCuUGG- -5' |
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18022 | 3' | -54.1 | NC_004665.1 | + | 8027 | 0.73 | 0.302341 |
Target: 5'- gCACCcuUCggACCAGCguaagCCAucagaagucGCCCGAGCCg -3' miRNA: 3'- -GUGGu-AG--UGGUCGa----GGU---------UGGGCUUGG- -5' |
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18022 | 3' | -54.1 | NC_004665.1 | + | 1269 | 0.66 | 0.643653 |
Target: 5'- -uCCAUCugCcGUUCCAuuGCCUugugGAACCg -3' miRNA: 3'- guGGUAGugGuCGAGGU--UGGG----CUUGG- -5' |
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18022 | 3' | -54.1 | NC_004665.1 | + | 29759 | 0.67 | 0.620871 |
Target: 5'- aCGCCA--GCCAGCUC-GACuuGAugCc -3' miRNA: 3'- -GUGGUagUGGUCGAGgUUGggCUugG- -5' |
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18022 | 3' | -54.1 | NC_004665.1 | + | 4303 | 0.67 | 0.60949 |
Target: 5'- aGCgGUugucCAUCAGCUCCAGCuuGucguAGCCa -3' miRNA: 3'- gUGgUA----GUGGUCGAGGUUGggC----UUGG- -5' |
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18022 | 3' | -54.1 | NC_004665.1 | + | 19915 | 0.71 | 0.396242 |
Target: 5'- uGCC-UUACCAGCUCgAagcgcccACUCGGGCCu -3' miRNA: 3'- gUGGuAGUGGUCGAGgU-------UGGGCUUGG- -5' |
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18022 | 3' | -54.1 | NC_004665.1 | + | 22766 | 0.67 | 0.620871 |
Target: 5'- uCAUCGUCACCAGCguugcgUCCAuCCCa---- -3' miRNA: 3'- -GUGGUAGUGGUCG------AGGUuGGGcuugg -5' |
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18022 | 3' | -54.1 | NC_004665.1 | + | 17982 | 0.7 | 0.436109 |
Target: 5'- gACCu---CCAGCUCCuGCUCGGGCUu -3' miRNA: 3'- gUGGuaguGGUCGAGGuUGGGCUUGG- -5' |
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18022 | 3' | -54.1 | NC_004665.1 | + | 34640 | 0.67 | 0.598131 |
Target: 5'- aCGCgAUCAgCAGaugCCuuGCUCGAACCg -3' miRNA: 3'- -GUGgUAGUgGUCga-GGu-UGGGCUUGG- -5' |
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18022 | 3' | -54.1 | NC_004665.1 | + | 3981 | 0.67 | 0.620871 |
Target: 5'- gCGCUcUCACgGGUUCCcACCUcGACCg -3' miRNA: 3'- -GUGGuAGUGgUCGAGGuUGGGcUUGG- -5' |
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18022 | 3' | -54.1 | NC_004665.1 | + | 32204 | 0.66 | 0.666389 |
Target: 5'- gACUcgCACUGGCagCCGauGCCUGAGCUu -3' miRNA: 3'- gUGGuaGUGGUCGa-GGU--UGGGCUUGG- -5' |
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18022 | 3' | -54.1 | NC_004665.1 | + | 29461 | 0.69 | 0.498363 |
Target: 5'- aCGCUc-CAUCAGggCCAGCCuCGAACCa -3' miRNA: 3'- -GUGGuaGUGGUCgaGGUUGG-GCUUGG- -5' |
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18022 | 3' | -54.1 | NC_004665.1 | + | 33248 | 0.68 | 0.564277 |
Target: 5'- aGCCAgagcgCACCAGCaacCCGGCCagcguugugGAACCc -3' miRNA: 3'- gUGGUa----GUGGUCGa--GGUUGGg--------CUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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