miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18048 5' -54.1 NC_004680.1 + 44408 0.66 0.762092
Target:  5'- cGUugAGCcCCACAUacuuugagGCGGAUCCGCGUu -3'
miRNA:   3'- aCG--UCGaGGUGUGg-------CGUUUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 44353 0.68 0.674999
Target:  5'- gGCAGUUCgACACCGUAcAaccagacagcuucUCCcCGCu -3'
miRNA:   3'- aCGUCGAGgUGUGGCGUuU-------------AGGuGCG- -5'
18048 5' -54.1 NC_004680.1 + 44241 0.71 0.469871
Target:  5'- gGCAGCgggaaaacCUACACCGCAc--UCGCGCu -3'
miRNA:   3'- aCGUCGa-------GGUGUGGCGUuuaGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 43719 0.73 0.401639
Target:  5'- uUGCAGUUCCugGaCCGCGAA---GCGCu -3'
miRNA:   3'- -ACGUCGAGGugU-GGCGUUUaggUGCG- -5'
18048 5' -54.1 NC_004680.1 + 43586 0.66 0.782464
Target:  5'- cGguGUcCCACcuGCCGCGAAacuugucCCACGUg -3'
miRNA:   3'- aCguCGaGGUG--UGGCGUUUa------GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 42378 0.69 0.62059
Target:  5'- gGcCAGCaUCCGCGCCGCuuccUCCAgGa -3'
miRNA:   3'- aC-GUCG-AGGUGUGGCGuuu-AGGUgCg -5'
18048 5' -54.1 NC_004680.1 + 42204 0.66 0.773371
Target:  5'- aGCugGGCUgCCAcCACCGCAccgugcagcgugcCCGCGCg -3'
miRNA:   3'- aCG--UCGA-GGU-GUGGCGUuua----------GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 41652 0.72 0.449754
Target:  5'- gGCAGaagUCCACACCaGCGAcuggcguucCCGCGCg -3'
miRNA:   3'- aCGUCg--AGGUGUGG-CGUUua-------GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 40973 0.75 0.2784
Target:  5'- aGUAG-UCCACGCCGCGggcgguGGUCCACuGCu -3'
miRNA:   3'- aCGUCgAGGUGUGGCGU------UUAGGUG-CG- -5'
18048 5' -54.1 NC_004680.1 + 40738 0.69 0.576298
Target:  5'- cGCAGagccCCACGCCacgacgugcGCAGAgucCCACGCc -3'
miRNA:   3'- aCGUCga--GGUGUGG---------CGUUUa--GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 40690 0.69 0.576298
Target:  5'- cGCAGagccCCACGCCacgacgugcGCAGAgccCCACGCc -3'
miRNA:   3'- aCGUCga--GGUGUGG---------CGUUUa--GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 40668 0.67 0.741175
Target:  5'- gUGgGGCUCUGCGCacgucgaggCGCGGGgcUCUGCGCa -3'
miRNA:   3'- -ACgUCGAGGUGUG---------GCGUUU--AGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 40642 0.69 0.576298
Target:  5'- cGCAGagccCCACGCCacgacgugcGCAGAgccCCACGCc -3'
miRNA:   3'- aCGUCga--GGUGUGG---------CGUUUa--GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 40595 0.7 0.543538
Target:  5'- gUGCAGagccCCACGCCucgacgugcGCAGAgccCCACGCc -3'
miRNA:   3'- -ACGUCga--GGUGUGG---------CGUUUa--GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 40088 0.77 0.225392
Target:  5'- gUGaCGGC-CCGCugcgucaGCCGUAGAUCCGCGCc -3'
miRNA:   3'- -AC-GUCGaGGUG-------UGGCGUUUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 39872 0.73 0.392415
Target:  5'- cUGCGgcGCUCCAUGCgGCGc-UCCAUGCg -3'
miRNA:   3'- -ACGU--CGAGGUGUGgCGUuuAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 39836 0.73 0.392415
Target:  5'- cUGCGgcGCUCCAUGCgGCGc-UCCAUGCg -3'
miRNA:   3'- -ACGU--CGAGGUGUGgCGUuuAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 39788 0.73 0.392415
Target:  5'- cUGCGgcGCUCCAUGCgGCGc-UCCAUGCg -3'
miRNA:   3'- -ACGU--CGAGGUGUGgCGUuuAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 39692 0.73 0.392415
Target:  5'- cUGCGgcGCUCCAUGCgGCGc-UCCAUGCg -3'
miRNA:   3'- -ACGU--CGAGGUGUGgCGUuuAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 39656 0.73 0.392415
Target:  5'- cUGCGgcGCUCCAUGCgGCGc-UCCAUGCa -3'
miRNA:   3'- -ACGU--CGAGGUGUGgCGUuuAGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.