miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18054 3' -53.4 NC_004680.1 + 15522 0.67 0.780794
Target:  5'- gGACAgACaGCCcaUCCCGCGACAgggcuugcagcACGgugCCg -3'
miRNA:   3'- -UUGUgUG-CGG--AGGGUGCUGU-----------UGUa--GG- -5'
18054 3' -53.4 NC_004680.1 + 10363 0.66 0.837962
Target:  5'- cAGCuccuuCGCCagCCACGACAACGggaugCCc -3'
miRNA:   3'- -UUGugu--GCGGagGGUGCUGUUGUa----GG- -5'
18054 3' -53.4 NC_004680.1 + 32488 0.66 0.837962
Target:  5'- --uGCGCGCC-CgCAgCGACGACggCCg -3'
miRNA:   3'- uugUGUGCGGaGgGU-GCUGUUGuaGG- -5'
18054 3' -53.4 NC_004680.1 + 48835 0.66 0.835275
Target:  5'- uGCGCGCGCUUCCCGaguauucgguuuucUGAaccccggucuCGACAUCg -3'
miRNA:   3'- uUGUGUGCGGAGGGU--------------GCU----------GUUGUAGg -5'
18054 3' -53.4 NC_004680.1 + 18768 0.66 0.828014
Target:  5'- -uCugAUGCCaaggaugUCCCACGAgAACAaCCc -3'
miRNA:   3'- uuGugUGCGG-------AGGGUGCUgUUGUaGG- -5'
18054 3' -53.4 NC_004680.1 + 9304 0.66 0.810237
Target:  5'- cAGCACGCGCCa-CCGCGccauugaccggcGCGAaAUCCa -3'
miRNA:   3'- -UUGUGUGCGGagGGUGC------------UGUUgUAGG- -5'
18054 3' -53.4 NC_004680.1 + 34547 0.66 0.810237
Target:  5'- cAGCAU-CGCCgacuaCCGCGGCGGCGaacacUCCg -3'
miRNA:   3'- -UUGUGuGCGGag---GGUGCUGUUGU-----AGG- -5'
18054 3' -53.4 NC_004680.1 + 2383 0.66 0.810237
Target:  5'- --aACGCGCCaacaaacgcaCCCGCGACAu--UCCg -3'
miRNA:   3'- uugUGUGCGGa---------GGGUGCUGUuguAGG- -5'
18054 3' -53.4 NC_004680.1 + 43514 0.66 0.800599
Target:  5'- -uCACgACGCCUCCUccGCGACcuaguGCGUUg -3'
miRNA:   3'- uuGUG-UGCGGAGGG--UGCUGu----UGUAGg -5'
18054 3' -53.4 NC_004680.1 + 51264 0.71 0.530784
Target:  5'- -cCGCACGUaCUCCCucagauGCGACAGCG-CCa -3'
miRNA:   3'- uuGUGUGCG-GAGGG------UGCUGUUGUaGG- -5'
18054 3' -53.4 NC_004680.1 + 10801 0.69 0.626411
Target:  5'- cAACGCccuugauCGCCUUCCACGcggcgaacgcgcccACAACAUCg -3'
miRNA:   3'- -UUGUGu------GCGGAGGGUGC--------------UGUUGUAGg -5'
18054 3' -53.4 NC_004680.1 + 39046 0.68 0.696204
Target:  5'- cACGCugcUGCCUCaUCGCGGCGAguUCCu -3'
miRNA:   3'- uUGUGu--GCGGAG-GGUGCUGUUguAGG- -5'
18054 3' -53.4 NC_004680.1 + 11409 0.67 0.770649
Target:  5'- --gGCACGCUUCuCCGCcaguuuguGGCGgGCAUCCa -3'
miRNA:   3'- uugUGUGCGGAG-GGUG--------CUGU-UGUAGG- -5'
18054 3' -53.4 NC_004680.1 + 430 0.7 0.607503
Target:  5'- cGCACGCGCCU-UCGCGuuauCGGCAgUCCa -3'
miRNA:   3'- uUGUGUGCGGAgGGUGCu---GUUGU-AGG- -5'
18054 3' -53.4 NC_004680.1 + 41171 0.67 0.764491
Target:  5'- -cCACGCGCCgcgCCUuugccuugucguccaGCGGCAcaagcuCAUCCa -3'
miRNA:   3'- uuGUGUGCGGa--GGG---------------UGCUGUu-----GUAGG- -5'
18054 3' -53.4 NC_004680.1 + 50629 0.68 0.707124
Target:  5'- ----aGCGCaUCCCAguccgccugguCGACAGCAUCCu -3'
miRNA:   3'- uugugUGCGgAGGGU-----------GCUGUUGUAGG- -5'
18054 3' -53.4 NC_004680.1 + 37981 0.71 0.552422
Target:  5'- aGGCGCACGCCgguacgcaUCCUcgGCGGCAGuCAUgCCg -3'
miRNA:   3'- -UUGUGUGCGG--------AGGG--UGCUGUU-GUA-GG- -5'
18054 3' -53.4 NC_004680.1 + 2203 1.09 0.001674
Target:  5'- cAACACACGCCUCCCACGACAACAUCCc -3'
miRNA:   3'- -UUGUGUGCGGAGGGUGCUGUUGUAGG- -5'
18054 3' -53.4 NC_004680.1 + 45595 0.67 0.749932
Target:  5'- uGGCGuCGCGCCUCCUGCuguacaucuccGACGucaggauCGUCCg -3'
miRNA:   3'- -UUGU-GUGCGGAGGGUG-----------CUGUu------GUAGG- -5'
18054 3' -53.4 NC_004680.1 + 33657 0.68 0.717968
Target:  5'- cAGCGCAgGCCgaggaguucCCCACGGCgGGCGcCCg -3'
miRNA:   3'- -UUGUGUgCGGa--------GGGUGCUG-UUGUaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.