miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18060 3' -51.2 NC_004680.1 + 20156 0.66 0.933539
Target:  5'- uGAuuUGUuguCGCCGGAGgaUCA-GGCGGCg -3'
miRNA:   3'- gCU--ACAu--GUGGCUUC--AGUaCCGUCGg -5'
18060 3' -51.2 NC_004680.1 + 25429 0.66 0.933539
Target:  5'- cCGAgcuugACGCCGAAc---UGGCGGCCc -3'
miRNA:   3'- -GCUaca--UGUGGCUUcaguACCGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 34560 0.66 0.933539
Target:  5'- ----cUGCGCCGcccauGUUGUGGguGCCg -3'
miRNA:   3'- gcuacAUGUGGCuu---CAGUACCguCGG- -5'
18060 3' -51.2 NC_004680.1 + 19631 0.66 0.927895
Target:  5'- uCGAaaccUGUugGCCGAGGcCcgGGCAcGUUc -3'
miRNA:   3'- -GCU----ACAugUGGCUUCaGuaCCGU-CGG- -5'
18060 3' -51.2 NC_004680.1 + 44868 0.66 0.927895
Target:  5'- aCGGUGgcggagUACCGAAaaCAagcgcUGGCGGCCg -3'
miRNA:   3'- -GCUACau----GUGGCUUcaGU-----ACCGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 24966 0.66 0.927895
Target:  5'- gCGAUGUG-ACCGGAG-CAagcggUGG-AGCCg -3'
miRNA:   3'- -GCUACAUgUGGCUUCaGU-----ACCgUCGG- -5'
18060 3' -51.2 NC_004680.1 + 47910 0.66 0.927895
Target:  5'- gGAUccgACACCGGAGcCGcggguguuUGuGCGGCCg -3'
miRNA:   3'- gCUAca-UGUGGCUUCaGU--------AC-CGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 26024 0.66 0.921962
Target:  5'- uCGAUGguCACCacGGcaUCAUGGCGGCg -3'
miRNA:   3'- -GCUACauGUGGcuUC--AGUACCGUCGg -5'
18060 3' -51.2 NC_004680.1 + 1239 0.66 0.921962
Target:  5'- aCGuUGUACACguCGAcGgcugGGCAGCCg -3'
miRNA:   3'- -GCuACAUGUG--GCUuCaguaCCGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 27824 0.66 0.921962
Target:  5'- gGAUGgUugGCCGcAGcUC--GGCGGCCg -3'
miRNA:   3'- gCUAC-AugUGGCuUC-AGuaCCGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 7667 0.66 0.921962
Target:  5'- ---cGUuCAUCGAg--CGUGGCGGCCu -3'
miRNA:   3'- gcuaCAuGUGGCUucaGUACCGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 22198 0.66 0.915743
Target:  5'- uCGAggccGCGCCGAAGUU-UGuGCGGUCg -3'
miRNA:   3'- -GCUaca-UGUGGCUUCAGuAC-CGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 3713 0.66 0.909237
Target:  5'- uCGGUG-GCACCGGuuGUCcaaGCGGCCc -3'
miRNA:   3'- -GCUACaUGUGGCUu-CAGuacCGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 23784 0.66 0.909237
Target:  5'- cCGAUGU-CACCGAuGUgAcGGCgAGCg -3'
miRNA:   3'- -GCUACAuGUGGCUuCAgUaCCG-UCGg -5'
18060 3' -51.2 NC_004680.1 + 11246 0.66 0.902447
Target:  5'- aCGAcGUugcCGCCGggGauUCcUGGCAuGCCg -3'
miRNA:   3'- -GCUaCAu--GUGGCuuC--AGuACCGU-CGG- -5'
18060 3' -51.2 NC_004680.1 + 42291 0.67 0.895376
Target:  5'- ----cUGCACgGugcGGUgGUGGCAGCCc -3'
miRNA:   3'- gcuacAUGUGgCu--UCAgUACCGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 5319 0.67 0.89247
Target:  5'- cCGGUGUcggaaaucgcgucCGCCGAGGUC-UGcCGGCCa -3'
miRNA:   3'- -GCUACAu------------GUGGCUUCAGuACcGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 28563 0.67 0.888029
Target:  5'- -cGUGUGgGCCGA--UCAcGGCGGCUc -3'
miRNA:   3'- gcUACAUgUGGCUucAGUaCCGUCGG- -5'
18060 3' -51.2 NC_004680.1 + 45842 0.67 0.888029
Target:  5'- uGAUGUACACgguuuCGggGaCGUGGCc-CCa -3'
miRNA:   3'- gCUACAUGUG-----GCuuCaGUACCGucGG- -5'
18060 3' -51.2 NC_004680.1 + 20892 0.67 0.888029
Target:  5'- --cUGU-CACCGGAGUCGuaugaggcgUGGCuGUCa -3'
miRNA:   3'- gcuACAuGUGGCUUCAGU---------ACCGuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.