miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18063 5' -55 NC_004680.1 + 12729 0.65 0.780706
Target:  5'- cCGGucuGCGCGGCCuGAccaGCGCCGggugCCa -3'
miRNA:   3'- -GCU---UGCGUCGGuCU---UGCGGUaga-GGc -5'
18063 5' -55 NC_004680.1 + 9309 0.65 0.780706
Target:  5'- gCGAACaGCAcgcGCCAccGCGCCAUUgaCCGg -3'
miRNA:   3'- -GCUUG-CGU---CGGUcuUGCGGUAGa-GGC- -5'
18063 5' -55 NC_004680.1 + 8880 0.66 0.770735
Target:  5'- uGAcCGC-GCCGGGACGg-GUCUCCGc -3'
miRNA:   3'- gCUuGCGuCGGUCUUGCggUAGAGGC- -5'
18063 5' -55 NC_004680.1 + 10691 0.66 0.769729
Target:  5'- --uGCGCAGucucagcggcaucCCGGAACGCC-UCUuuGa -3'
miRNA:   3'- gcuUGCGUC-------------GGUCUUGCGGuAGAggC- -5'
18063 5' -55 NC_004680.1 + 36596 0.67 0.71898
Target:  5'- gCGAGCGguGUCGGcgaa-CAUCUCCGu -3'
miRNA:   3'- -GCUUGCguCGGUCuugcgGUAGAGGC- -5'
18063 5' -55 NC_004680.1 + 39635 0.67 0.71898
Target:  5'- gGAGCGCcGCaCGGAGCGCCGcagggagcgCCGc -3'
miRNA:   3'- gCUUGCGuCG-GUCUUGCGGUaga------GGC- -5'
18063 5' -55 NC_004680.1 + 11793 0.67 0.697605
Target:  5'- uGAcCGCucuccCCGGGGCGCCGUCUgCa -3'
miRNA:   3'- gCUuGCGuc---GGUCUUGCGGUAGAgGc -5'
18063 5' -55 NC_004680.1 + 39839 0.67 0.697605
Target:  5'- aGAGCGCcGCaCGGAGCGCCGcagggagcgCCGc -3'
miRNA:   3'- gCUUGCGuCG-GUCUUGCGGUaga------GGC- -5'
18063 5' -55 NC_004680.1 + 47915 0.67 0.686817
Target:  5'- ---cCGCAGCCAGccGGCGCUccaaCUCCGc -3'
miRNA:   3'- gcuuGCGUCGGUC--UUGCGGua--GAGGC- -5'
18063 5' -55 NC_004680.1 + 57869 0.67 0.675978
Target:  5'- gGucCGCAGCagacgCGGAACGCUAgCUCCa -3'
miRNA:   3'- gCuuGCGUCG-----GUCUUGCGGUaGAGGc -5'
18063 5' -55 NC_004680.1 + 22947 0.68 0.665097
Target:  5'- gGAACGUGGCCGcGAugGCUGUUcCCc -3'
miRNA:   3'- gCUUGCGUCGGU-CUugCGGUAGaGGc -5'
18063 5' -55 NC_004680.1 + 47337 0.68 0.621373
Target:  5'- gCGAGgGaCAGCCGG-ACGCCcuuaUCCGg -3'
miRNA:   3'- -GCUUgC-GUCGGUCuUGCGGuag-AGGC- -5'
18063 5' -55 NC_004680.1 + 43547 0.68 0.610442
Target:  5'- uCGAccaGgGCGGCCGGGAacgcUGCCGcugCUCCGa -3'
miRNA:   3'- -GCU---UgCGUCGGUCUU----GCGGUa--GAGGC- -5'
18063 5' -55 NC_004680.1 + 11092 0.68 0.609349
Target:  5'- uGGugGCGGCCccggcgcccaagcAGAACGCCGcggCCGu -3'
miRNA:   3'- gCUugCGUCGG-------------UCUUGCGGUagaGGC- -5'
18063 5' -55 NC_004680.1 + 57202 0.69 0.577793
Target:  5'- aGAAUGCAGCCGGGACGUagguguggCUgCa -3'
miRNA:   3'- gCUUGCGUCGGUCUUGCGgua-----GAgGc -5'
18063 5' -55 NC_004680.1 + 13343 0.69 0.556235
Target:  5'- aGAGCGCAucaauGUUGGuGAUGCCGUCUUCGg -3'
miRNA:   3'- gCUUGCGU-----CGGUC-UUGCGGUAGAGGC- -5'
18063 5' -55 NC_004680.1 + 12466 0.7 0.545542
Target:  5'- cCGAugGCuGCCGGuGCGCCAcaaagccuguUCaCCGg -3'
miRNA:   3'- -GCUugCGuCGGUCuUGCGGU----------AGaGGC- -5'
18063 5' -55 NC_004680.1 + 17566 0.7 0.534915
Target:  5'- aCGGACGCuGCaCuGcAACGCCGacugCUCCGg -3'
miRNA:   3'- -GCUUGCGuCG-GuC-UUGCGGUa---GAGGC- -5'
18063 5' -55 NC_004680.1 + 16813 0.7 0.534915
Target:  5'- uCGAACGUGGCCGGAAcacccgguuCGCCcuUCUCg- -3'
miRNA:   3'- -GCUUGCGUCGGUCUU---------GCGGu-AGAGgc -5'
18063 5' -55 NC_004680.1 + 33572 0.7 0.513891
Target:  5'- gGAACGCGGUguGGaugaugugcuGCGCCAcgUCUgCCGg -3'
miRNA:   3'- gCUUGCGUCGguCU----------UGCGGU--AGA-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.