miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18066 3' -55.4 NC_004680.1 + 7327 1.08 0.00118
Target:  5'- gUGCACCGACACGACAGCCGAAUCGCUg -3'
miRNA:   3'- -ACGUGGCUGUGCUGUCGGCUUAGCGA- -5'
18066 3' -55.4 NC_004680.1 + 47840 0.82 0.082473
Target:  5'- aGCGCCGGCuggcuGCGGCgguuGGCCGggUCGCUg -3'
miRNA:   3'- aCGUGGCUG-----UGCUG----UCGGCuuAGCGA- -5'
18066 3' -55.4 NC_004680.1 + 24232 0.72 0.383924
Target:  5'- gGCACCGGCACGGCGGgUG---UGCUg -3'
miRNA:   3'- aCGUGGCUGUGCUGUCgGCuuaGCGA- -5'
18066 3' -55.4 NC_004680.1 + 39027 0.72 0.38749
Target:  5'- cGCGCU-ACACGuggccgcacuccaaaGCAGCCGAGUCGUc -3'
miRNA:   3'- aCGUGGcUGUGC---------------UGUCGGCUUAGCGa -5'
18066 3' -55.4 NC_004680.1 + 37878 0.71 0.430033
Target:  5'- gGuCACCGGCAUGACugccGCCGAGgaugCGUa -3'
miRNA:   3'- aC-GUGGCUGUGCUGu---CGGCUUa---GCGa -5'
18066 3' -55.4 NC_004680.1 + 22781 0.71 0.449367
Target:  5'- cGCcCCGGgAgaaGGCGGCCGAGUCGUc -3'
miRNA:   3'- aCGuGGCUgUg--CUGUCGGCUUAGCGa -5'
18066 3' -55.4 NC_004680.1 + 46783 0.7 0.479239
Target:  5'- --aGCCGAUgaACGugAGCCGggUCGa- -3'
miRNA:   3'- acgUGGCUG--UGCugUCGGCuuAGCga -5'
18066 3' -55.4 NC_004680.1 + 10531 0.7 0.486349
Target:  5'- cGCcCCGAuaCGCGACAGCgCGAaauucauguuguuaAUCGCg -3'
miRNA:   3'- aCGuGGCU--GUGCUGUCG-GCU--------------UAGCGa -5'
18066 3' -55.4 NC_004680.1 + 47580 0.69 0.529988
Target:  5'- gUGCGCCGcCuACGAuccgugguuuccuCAGCCGAAcCGCg -3'
miRNA:   3'- -ACGUGGCuG-UGCU-------------GUCGGCUUaGCGa -5'
18066 3' -55.4 NC_004680.1 + 12690 0.69 0.541661
Target:  5'- gGcCAUCGAgUACGGCGGCCaGGUCGCc -3'
miRNA:   3'- aC-GUGGCU-GUGCUGUCGGcUUAGCGa -5'
18066 3' -55.4 NC_004680.1 + 47840 0.69 0.541661
Target:  5'- cGCACCGAUcCc---GCCGGAUCGCa -3'
miRNA:   3'- aCGUGGCUGuGcuguCGGCUUAGCGa -5'
18066 3' -55.4 NC_004680.1 + 30743 0.69 0.552346
Target:  5'- aUGCGCa-GgGCGACGGCUGGcagGUCGCg -3'
miRNA:   3'- -ACGUGgcUgUGCUGUCGGCU---UAGCGa -5'
18066 3' -55.4 NC_004680.1 + 25313 0.68 0.606555
Target:  5'- cGCGCCG-CugGugAcCCGAAcCGCUa -3'
miRNA:   3'- aCGUGGCuGugCugUcGGCUUaGCGA- -5'
18066 3' -55.4 NC_004680.1 + 54968 0.68 0.617497
Target:  5'- gGgGCCGGCACGAuCGGUggCGggUCGg- -3'
miRNA:   3'- aCgUGGCUGUGCU-GUCG--GCuuAGCga -5'
18066 3' -55.4 NC_004680.1 + 58401 0.68 0.617497
Target:  5'- gGCGCCGGCAgGugAGCCaguggGCUg -3'
miRNA:   3'- aCGUGGCUGUgCugUCGGcuuagCGA- -5'
18066 3' -55.4 NC_004680.1 + 44213 0.67 0.639409
Target:  5'- aGCAgCGAgaagaGCGGCAGCCaguUCGCg -3'
miRNA:   3'- aCGUgGCUg----UGCUGUCGGcuuAGCGa -5'
18066 3' -55.4 NC_004680.1 + 9669 0.67 0.639409
Target:  5'- -uCGCCGAuCGCGcggccaGCAGCCGAAcCGCc -3'
miRNA:   3'- acGUGGCU-GUGC------UGUCGGCUUaGCGa -5'
18066 3' -55.4 NC_004680.1 + 38363 0.67 0.639409
Target:  5'- cGCACgCGcUGCGGCuucuacuGCUGGAUCGCUc -3'
miRNA:   3'- aCGUG-GCuGUGCUGu------CGGCUUAGCGA- -5'
18066 3' -55.4 NC_004680.1 + 210 0.67 0.65036
Target:  5'- uUGCGCCGAgCACGcACAGaaGGAUCu-- -3'
miRNA:   3'- -ACGUGGCU-GUGC-UGUCggCUUAGcga -5'
18066 3' -55.4 NC_004680.1 + 24245 0.67 0.65036
Target:  5'- uUGCACCGACuCGuCAGCCu--UCGaCa -3'
miRNA:   3'- -ACGUGGCUGuGCuGUCGGcuuAGC-Ga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.