Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18066 | 3' | -55.4 | NC_004680.1 | + | 210 | 0.67 | 0.65036 |
Target: 5'- uUGCGCCGAgCACGcACAGaaGGAUCu-- -3' miRNA: 3'- -ACGUGGCU-GUGC-UGUCggCUUAGcga -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 1737 | 0.67 | 0.683073 |
Target: 5'- cGCAaucucagUGAcCACGACAGCCG--UCGCa -3' miRNA: 3'- aCGUg------GCU-GUGCUGUCGGCuuAGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 4340 | 0.66 | 0.746895 |
Target: 5'- aGCGCUGACccccuCGGCGGuCUGGAUaaCGCa -3' miRNA: 3'- aCGUGGCUGu----GCUGUC-GGCUUA--GCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 5901 | 0.67 | 0.672203 |
Target: 5'- uUGCugCGGCGCuugGAUuGCCGAG-CGCc -3' miRNA: 3'- -ACGugGCUGUG---CUGuCGGCUUaGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 7327 | 1.08 | 0.00118 |
Target: 5'- gUGCACCGACACGACAGCCGAAUCGCUg -3' miRNA: 3'- -ACGUGGCUGUGCUGUCGGCUUAGCGA- -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 7624 | 0.67 | 0.683073 |
Target: 5'- gGCACCGACugGAgcgcCGGCgGAuUCaCUg -3' miRNA: 3'- aCGUGGCUGugCU----GUCGgCUuAGcGA- -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 9669 | 0.67 | 0.639409 |
Target: 5'- -uCGCCGAuCGCGcggccaGCAGCCGAAcCGCc -3' miRNA: 3'- acGUGGCU-GUGC------UGUCGGCUUaGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 10531 | 0.7 | 0.486349 |
Target: 5'- cGCcCCGAuaCGCGACAGCgCGAaauucauguuguuaAUCGCg -3' miRNA: 3'- aCGuGGCU--GUGCUGUCG-GCU--------------UAGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 12422 | 0.67 | 0.670024 |
Target: 5'- cGCGggacuccCCGGCGCGGCAcCCGAagcggcgGUCGCc -3' miRNA: 3'- aCGU-------GGCUGUGCUGUcGGCU-------UAGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 12690 | 0.69 | 0.541661 |
Target: 5'- gGcCAUCGAgUACGGCGGCCaGGUCGCc -3' miRNA: 3'- aC-GUGGCU-GUGCUGUCGGcUUAGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 12787 | 0.66 | 0.746895 |
Target: 5'- gGCGCCGAuCGCGGCgaccuGGCCGc--CGUa -3' miRNA: 3'- aCGUGGCU-GUGCUG-----UCGGCuuaGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 14934 | 0.66 | 0.715351 |
Target: 5'- gGuCGCCgGACugGAgGGCCG-AUUGCc -3' miRNA: 3'- aC-GUGG-CUGugCUgUCGGCuUAGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 17153 | 0.66 | 0.73648 |
Target: 5'- cUGCGCCGGgAuCGACaccugggccagAGUCGAGuUCGCg -3' miRNA: 3'- -ACGUGGCUgU-GCUG-----------UCGGCUU-AGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 22781 | 0.71 | 0.449367 |
Target: 5'- cGCcCCGGgAgaaGGCGGCCGAGUCGUc -3' miRNA: 3'- aCGuGGCUgUg--CUGUCGGCUUAGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 23422 | 0.66 | 0.725962 |
Target: 5'- cUGUuugACCGugACGGCAcGCUG-AUCGUg -3' miRNA: 3'- -ACG---UGGCugUGCUGU-CGGCuUAGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 23895 | 0.67 | 0.672203 |
Target: 5'- cGCAgcUUGACGguaaGGCGGCCGcGUCGCa -3' miRNA: 3'- aCGU--GGCUGUg---CUGUCGGCuUAGCGa -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 24232 | 0.72 | 0.383924 |
Target: 5'- gGCACCGGCACGGCGGgUG---UGCUg -3' miRNA: 3'- aCGUGGCUGUGCUGUCgGCuuaGCGA- -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 24245 | 0.67 | 0.65036 |
Target: 5'- uUGCACCGACuCGuCAGCCu--UCGaCa -3' miRNA: 3'- -ACGUGGCUGuGCuGUCGGcuuAGC-Ga -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 25313 | 0.68 | 0.606555 |
Target: 5'- cGCGCCG-CugGugAcCCGAAcCGCUa -3' miRNA: 3'- aCGUGGCuGugCugUcGGCUUaGCGA- -5' |
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18066 | 3' | -55.4 | NC_004680.1 | + | 26466 | 0.67 | 0.683073 |
Target: 5'- cGCucGCCGACAgGAUcGCUGAccgcAUCGCc -3' miRNA: 3'- aCG--UGGCUGUgCUGuCGGCU----UAGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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