miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18066 3' -55.4 NC_004680.1 + 47840 0.82 0.082473
Target:  5'- aGCGCCGGCuggcuGCGGCgguuGGCCGggUCGCUg -3'
miRNA:   3'- aCGUGGCUG-----UGCUG----UCGGCuuAGCGA- -5'
18066 3' -55.4 NC_004680.1 + 7624 0.67 0.683073
Target:  5'- gGCACCGACugGAgcgcCGGCgGAuUCaCUg -3'
miRNA:   3'- aCGUGGCUGugCU----GUCGgCUuAGcGA- -5'
18066 3' -55.4 NC_004680.1 + 26466 0.67 0.683073
Target:  5'- cGCucGCCGACAgGAUcGCUGAccgcAUCGCc -3'
miRNA:   3'- aCG--UGGCUGUgCUGuCGGCU----UAGCGa -5'
18066 3' -55.4 NC_004680.1 + 40776 0.66 0.693895
Target:  5'- aGuCAUCGACAUGACcGCCG--UUGCUc -3'
miRNA:   3'- aC-GUGGCUGUGCUGuCGGCuuAGCGA- -5'
18066 3' -55.4 NC_004680.1 + 27276 0.66 0.704658
Target:  5'- gGCGgCGACGCuGCcGCCGAGaaccUCGCc -3'
miRNA:   3'- aCGUgGCUGUGcUGuCGGCUU----AGCGa -5'
18066 3' -55.4 NC_004680.1 + 49124 0.66 0.715351
Target:  5'- aGC-CCGGCacucuaagccGCGACGGCgaGGUCGCUa -3'
miRNA:   3'- aCGuGGCUG----------UGCUGUCGgcUUAGCGA- -5'
18066 3' -55.4 NC_004680.1 + 23422 0.66 0.725962
Target:  5'- cUGUuugACCGugACGGCAcGCUG-AUCGUg -3'
miRNA:   3'- -ACG---UGGCugUGCUGU-CGGCuUAGCGa -5'
18066 3' -55.4 NC_004680.1 + 43634 0.66 0.725962
Target:  5'- cGCGagggaCGACGCGAaAGCCGg--CGCa -3'
miRNA:   3'- aCGUg----GCUGUGCUgUCGGCuuaGCGa -5'
18066 3' -55.4 NC_004680.1 + 4340 0.66 0.746895
Target:  5'- aGCGCUGACccccuCGGCGGuCUGGAUaaCGCa -3'
miRNA:   3'- aCGUGGCUGu----GCUGUC-GGCUUA--GCGa -5'
18066 3' -55.4 NC_004680.1 + 23895 0.67 0.672203
Target:  5'- cGCAgcUUGACGguaaGGCGGCCGcGUCGCa -3'
miRNA:   3'- aCGU--GGCUGUg---CUGUCGGCuUAGCGa -5'
18066 3' -55.4 NC_004680.1 + 5901 0.67 0.672203
Target:  5'- uUGCugCGGCGCuugGAUuGCCGAG-CGCc -3'
miRNA:   3'- -ACGugGCUGUG---CUGuCGGCUUaGCGa -5'
18066 3' -55.4 NC_004680.1 + 52196 0.67 0.661295
Target:  5'- cUGCGCCGGCAagcCGACgAGCCaGGagGCg -3'
miRNA:   3'- -ACGUGGCUGU---GCUG-UCGGcUUagCGa -5'
18066 3' -55.4 NC_004680.1 + 24232 0.72 0.383924
Target:  5'- gGCACCGGCACGGCGGgUG---UGCUg -3'
miRNA:   3'- aCGUGGCUGUGCUGUCgGCuuaGCGA- -5'
18066 3' -55.4 NC_004680.1 + 39027 0.72 0.38749
Target:  5'- cGCGCU-ACACGuggccgcacuccaaaGCAGCCGAGUCGUc -3'
miRNA:   3'- aCGUGGcUGUGC---------------UGUCGGCUUAGCGa -5'
18066 3' -55.4 NC_004680.1 + 37878 0.71 0.430033
Target:  5'- gGuCACCGGCAUGACugccGCCGAGgaugCGUa -3'
miRNA:   3'- aC-GUGGCUGUGCUGu---CGGCUUa---GCGa -5'
18066 3' -55.4 NC_004680.1 + 22781 0.71 0.449367
Target:  5'- cGCcCCGGgAgaaGGCGGCCGAGUCGUc -3'
miRNA:   3'- aCGuGGCUgUg--CUGUCGGCUUAGCGa -5'
18066 3' -55.4 NC_004680.1 + 47580 0.69 0.529988
Target:  5'- gUGCGCCGcCuACGAuccgugguuuccuCAGCCGAAcCGCg -3'
miRNA:   3'- -ACGUGGCuG-UGCU-------------GUCGGCUUaGCGa -5'
18066 3' -55.4 NC_004680.1 + 12690 0.69 0.541661
Target:  5'- gGcCAUCGAgUACGGCGGCCaGGUCGCc -3'
miRNA:   3'- aC-GUGGCU-GUGCUGUCGGcUUAGCGa -5'
18066 3' -55.4 NC_004680.1 + 30743 0.69 0.552346
Target:  5'- aUGCGCa-GgGCGACGGCUGGcagGUCGCg -3'
miRNA:   3'- -ACGUGgcUgUGCUGUCGGCU---UAGCGa -5'
18066 3' -55.4 NC_004680.1 + 54968 0.68 0.617497
Target:  5'- gGgGCCGGCACGAuCGGUggCGggUCGg- -3'
miRNA:   3'- aCgUGGCUGUGCU-GUCG--GCuuAGCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.