miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18066 5' -49.9 NC_004680.1 + 7291 1.13 0.003035
Target:  5'- gGGAACAUCACGACCAUCGACACGACGa -3'
miRNA:   3'- -CCUUGUAGUGCUGGUAGCUGUGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 35206 0.77 0.455977
Target:  5'- -aGACGcCGCGACCAgUGACACGACGc -3'
miRNA:   3'- ccUUGUaGUGCUGGUaGCUGUGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 47612 0.75 0.561361
Target:  5'- cGAACcgCGCcACCGUCGAgGCGugGg -3'
miRNA:   3'- cCUUGuaGUGcUGGUAGCUgUGCugC- -5'
18066 5' -49.9 NC_004680.1 + 32092 0.75 0.594427
Target:  5'- uGGAucGCAUCgugGCGACCAUCGAC-CGGg- -3'
miRNA:   3'- -CCU--UGUAG---UGCUGGUAGCUGuGCUgc -5'
18066 5' -49.9 NC_004680.1 + 16734 0.74 0.661176
Target:  5'- cGggUGUUcCGGCCAcguUCGAUACGACGg -3'
miRNA:   3'- cCuuGUAGuGCUGGU---AGCUGUGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 24125 0.73 0.705256
Target:  5'- -cGACGUCAcCGaACCAUCGAC-CGGCa -3'
miRNA:   3'- ccUUGUAGU-GC-UGGUAGCUGuGCUGc -5'
18066 5' -49.9 NC_004680.1 + 22888 0.72 0.758616
Target:  5'- ---cCAUCcUGACCAUCaguGACGCGACGa -3'
miRNA:   3'- ccuuGUAGuGCUGGUAG---CUGUGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 7594 0.71 0.789137
Target:  5'- aGGAGCGUCccuaugACGcaGCCAUUGAC-CGGCa -3'
miRNA:   3'- -CCUUGUAG------UGC--UGGUAGCUGuGCUGc -5'
18066 5' -49.9 NC_004680.1 + 57485 0.71 0.798991
Target:  5'- uGGGuucCAg-GCGGCCGUCGucCACGACGa -3'
miRNA:   3'- -CCUu--GUagUGCUGGUAGCu-GUGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 4214 0.71 0.798991
Target:  5'- cGGACAUCGCaGACCG-CGGCG-GACGc -3'
miRNA:   3'- cCUUGUAGUG-CUGGUaGCUGUgCUGC- -5'
18066 5' -49.9 NC_004680.1 + 6955 0.71 0.812484
Target:  5'- cGGAACgguccacgaacaaggGUCGCGGgaaGUCGGCGCGACu -3'
miRNA:   3'- -CCUUG---------------UAGUGCUgg-UAGCUGUGCUGc -5'
18066 5' -49.9 NC_004680.1 + 48266 0.71 0.814381
Target:  5'- uGGAACGuguUCACcccggagGGCCAauuuucggggucguUCGACACGugGg -3'
miRNA:   3'- -CCUUGU---AGUG-------CUGGU--------------AGCUGUGCugC- -5'
18066 5' -49.9 NC_004680.1 + 38709 0.7 0.827438
Target:  5'- cGAACcgaaAUCACGGCCcagagcauUCGACAUGGCc -3'
miRNA:   3'- cCUUG----UAGUGCUGGu-------AGCUGUGCUGc -5'
18066 5' -49.9 NC_004680.1 + 29334 0.7 0.827438
Target:  5'- gGGAACGUgCcCGACagAUCGACGCGAa- -3'
miRNA:   3'- -CCUUGUA-GuGCUGg-UAGCUGUGCUgc -5'
18066 5' -49.9 NC_004680.1 + 22141 0.7 0.853993
Target:  5'- cGGAccacGCAUCGCGAUauaCGGCGCGAa- -3'
miRNA:   3'- -CCU----UGUAGUGCUGguaGCUGUGCUgc -5'
18066 5' -49.9 NC_004680.1 + 50749 0.7 0.86238
Target:  5'- uGAACAcCGCGAUCGUgcuUGGCGCGAUa -3'
miRNA:   3'- cCUUGUaGUGCUGGUA---GCUGUGCUGc -5'
18066 5' -49.9 NC_004680.1 + 21338 0.69 0.878409
Target:  5'- uGGGACcgCGCGGgcucagccCCGUCGGCcacguaugGCGGCGc -3'
miRNA:   3'- -CCUUGuaGUGCU--------GGUAGCUG--------UGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 56323 0.69 0.878409
Target:  5'- cGGGCGUUAC-ACCAucuucgUCGACgACGACGa -3'
miRNA:   3'- cCUUGUAGUGcUGGU------AGCUG-UGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 26306 0.69 0.900489
Target:  5'- aGGACAUCcaGCGAucgacuucuUCAUCGAaCGCGACa -3'
miRNA:   3'- cCUUGUAG--UGCU---------GGUAGCU-GUGCUGc -5'
18066 5' -49.9 NC_004680.1 + 9308 0.69 0.900489
Target:  5'- cGAACAgCACGcgccaccgcGCCAUUGAC-CGGCGc -3'
miRNA:   3'- cCUUGUaGUGC---------UGGUAGCUGuGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.