Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18066 | 5' | -49.9 | NC_004680.1 | + | 4214 | 0.71 | 0.798991 |
Target: 5'- cGGACAUCGCaGACCG-CGGCG-GACGc -3' miRNA: 3'- cCUUGUAGUG-CUGGUaGCUGUgCUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 6955 | 0.71 | 0.812484 |
Target: 5'- cGGAACgguccacgaacaaggGUCGCGGgaaGUCGGCGCGACu -3' miRNA: 3'- -CCUUG---------------UAGUGCUgg-UAGCUGUGCUGc -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 7291 | 1.13 | 0.003035 |
Target: 5'- gGGAACAUCACGACCAUCGACACGACGa -3' miRNA: 3'- -CCUUGUAGUGCUGGUAGCUGUGCUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 7367 | 0.66 | 0.973598 |
Target: 5'- cGGccuCAUUcucaGCGGCCucAUCaGACGCGGCGa -3' miRNA: 3'- -CCuu-GUAG----UGCUGG--UAG-CUGUGCUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 7594 | 0.71 | 0.789137 |
Target: 5'- aGGAGCGUCccuaugACGcaGCCAUUGAC-CGGCa -3' miRNA: 3'- -CCUUGUAG------UGC--UGGUAGCUGuGCUGc -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 9308 | 0.69 | 0.900489 |
Target: 5'- cGAACAgCACGcgccaccgcGCCAUUGAC-CGGCGc -3' miRNA: 3'- cCUUGUaGUGC---------UGGUAGCUGuGCUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 12669 | 0.68 | 0.906636 |
Target: 5'- cGGggUgaagcugAUCAaccgGGCCAUCGAgUACGGCGg -3' miRNA: 3'- -CCuuG-------UAGUg---CUGGUAGCU-GUGCUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 13442 | 0.67 | 0.951262 |
Target: 5'- -uGGCGUCgaucgauGCGACCAgaucgcgguaGACGCGGCGa -3' miRNA: 3'- ccUUGUAG-------UGCUGGUag--------CUGUGCUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 13651 | 0.66 | 0.963799 |
Target: 5'- uGAACGUguCGGUCAUCGACucguaGACGa -3' miRNA: 3'- cCUUGUAguGCUGGUAGCUGug---CUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 15420 | 0.66 | 0.96157 |
Target: 5'- cGGAcugcaaccgcaaagcGCAUUcuGCGACCAuguUCucCACGACGg -3' miRNA: 3'- -CCU---------------UGUAG--UGCUGGU---AGcuGUGCUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 16734 | 0.74 | 0.661176 |
Target: 5'- cGggUGUUcCGGCCAcguUCGAUACGACGg -3' miRNA: 3'- cCuuGUAGuGCUGGU---AGCUGUGCUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 20857 | 0.66 | 0.963799 |
Target: 5'- uGAACAUguCaGCgAUCGACGCuGGCGg -3' miRNA: 3'- cCUUGUAguGcUGgUAGCUGUG-CUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 21338 | 0.69 | 0.878409 |
Target: 5'- uGGGACcgCGCGGgcucagccCCGUCGGCcacguaugGCGGCGc -3' miRNA: 3'- -CCUUGuaGUGCU--------GGUAGCUG--------UGCUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 21751 | 0.66 | 0.968646 |
Target: 5'- gGGAACggugagugccaccucGUCGCGGCCGaauaagugggcUGGCAUGGCGg -3' miRNA: 3'- -CCUUG---------------UAGUGCUGGUa----------GCUGUGCUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 22141 | 0.7 | 0.853993 |
Target: 5'- cGGAccacGCAUCGCGAUauaCGGCGCGAa- -3' miRNA: 3'- -CCU----UGUAGUGCUGguaGCUGUGCUgc -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 22888 | 0.72 | 0.758616 |
Target: 5'- ---cCAUCcUGACCAUCaguGACGCGACGa -3' miRNA: 3'- ccuuGUAGuGCUGGUAG---CUGUGCUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 23942 | 0.68 | 0.913841 |
Target: 5'- -cGACGUCAC-ACCAUCGACAUa--- -3' miRNA: 3'- ccUUGUAGUGcUGGUAGCUGUGcugc -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 24125 | 0.73 | 0.705256 |
Target: 5'- -cGACGUCAcCGaACCAUCGAC-CGGCa -3' miRNA: 3'- ccUUGUAGU-GC-UGGUAGCUGuGCUGc -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 26306 | 0.69 | 0.900489 |
Target: 5'- aGGACAUCcaGCGAucgacuucuUCAUCGAaCGCGACa -3' miRNA: 3'- cCUUGUAG--UGCU---------GGUAGCU-GUGCUGc -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 28551 | 0.66 | 0.967311 |
Target: 5'- cGAACucgGUCACGugUGggcCGAuCACGGCGg -3' miRNA: 3'- cCUUG---UAGUGCugGUa--GCU-GUGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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