miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18066 5' -49.9 NC_004680.1 + 58052 0.66 0.963434
Target:  5'- uGGAaaccguaggcgccGCAUaCAUGAaCAUCGACaACGGCGc -3'
miRNA:   3'- -CCU-------------UGUA-GUGCUgGUAGCUG-UGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 12669 0.68 0.906636
Target:  5'- cGGggUgaagcugAUCAaccgGGCCAUCGAgUACGGCGg -3'
miRNA:   3'- -CCuuG-------UAGUg---CUGGUAGCU-GUGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 58564 0.68 0.907305
Target:  5'- uGGAAa--CACGGCgGacgCGACACGugGg -3'
miRNA:   3'- -CCUUguaGUGCUGgUa--GCUGUGCugC- -5'
18066 5' -49.9 NC_004680.1 + 35996 0.68 0.913841
Target:  5'- gGGGACuAUCACGACCGcauacCGGC-CGAgGc -3'
miRNA:   3'- -CCUUG-UAGUGCUGGUa----GCUGuGCUgC- -5'
18066 5' -49.9 NC_004680.1 + 37952 0.68 0.913841
Target:  5'- uGAGCGUCugcggGCGGCCAUCGA-ACGGg- -3'
miRNA:   3'- cCUUGUAG-----UGCUGGUAGCUgUGCUgc -5'
18066 5' -49.9 NC_004680.1 + 47152 0.68 0.930083
Target:  5'- cGGACcgUACGACUcaccccccaucgucGUCGACACGGa- -3'
miRNA:   3'- cCUUGuaGUGCUGG--------------UAGCUGUGCUgc -5'
18066 5' -49.9 NC_004680.1 + 50239 0.68 0.93176
Target:  5'- aGGugGUCGaGACCGUCGAagaacuCGACGc -3'
miRNA:   3'- cCUugUAGUgCUGGUAGCUgu----GCUGC- -5'
18066 5' -49.9 NC_004680.1 + 29512 0.67 0.937167
Target:  5'- cGAacGCAUCgaagGCGACaagCGACGCGACc -3'
miRNA:   3'- cCU--UGUAG----UGCUGguaGCUGUGCUGc -5'
18066 5' -49.9 NC_004680.1 + 44689 0.67 0.940784
Target:  5'- cGGAACAgCGCGACgGaaucgaguaugaguUCGACGuuguCGGCGa -3'
miRNA:   3'- -CCUUGUaGUGCUGgU--------------AGCUGU----GCUGC- -5'
18066 5' -49.9 NC_004680.1 + 26306 0.69 0.900489
Target:  5'- aGGACAUCcaGCGAucgacuucuUCAUCGAaCGCGACa -3'
miRNA:   3'- cCUUGUAG--UGCU---------GGUAGCU-GUGCUGc -5'
18066 5' -49.9 NC_004680.1 + 56323 0.69 0.878409
Target:  5'- cGGGCGUUAC-ACCAucuucgUCGACgACGACGa -3'
miRNA:   3'- cCUUGUAGUGcUGGU------AGCUG-UGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 21338 0.69 0.878409
Target:  5'- uGGGACcgCGCGGgcucagccCCGUCGGCcacguaugGCGGCGc -3'
miRNA:   3'- -CCUUGuaGUGCU--------GGUAGCUG--------UGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 16734 0.74 0.661176
Target:  5'- cGggUGUUcCGGCCAcguUCGAUACGACGg -3'
miRNA:   3'- cCuuGUAGuGCUGGU---AGCUGUGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 22888 0.72 0.758616
Target:  5'- ---cCAUCcUGACCAUCaguGACGCGACGa -3'
miRNA:   3'- ccuuGUAGuGCUGGUAG---CUGUGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 7594 0.71 0.789137
Target:  5'- aGGAGCGUCccuaugACGcaGCCAUUGAC-CGGCa -3'
miRNA:   3'- -CCUUGUAG------UGC--UGGUAGCUGuGCUGc -5'
18066 5' -49.9 NC_004680.1 + 4214 0.71 0.798991
Target:  5'- cGGACAUCGCaGACCG-CGGCG-GACGc -3'
miRNA:   3'- cCUUGUAGUG-CUGGUaGCUGUgCUGC- -5'
18066 5' -49.9 NC_004680.1 + 6955 0.71 0.812484
Target:  5'- cGGAACgguccacgaacaaggGUCGCGGgaaGUCGGCGCGACu -3'
miRNA:   3'- -CCUUG---------------UAGUGCUgg-UAGCUGUGCUGc -5'
18066 5' -49.9 NC_004680.1 + 48266 0.71 0.814381
Target:  5'- uGGAACGuguUCACcccggagGGCCAauuuucggggucguUCGACACGugGg -3'
miRNA:   3'- -CCUUGU---AGUG-------CUGGU--------------AGCUGUGCugC- -5'
18066 5' -49.9 NC_004680.1 + 29334 0.7 0.827438
Target:  5'- gGGAACGUgCcCGACagAUCGACGCGAa- -3'
miRNA:   3'- -CCUUGUA-GuGCUGg-UAGCUGUGCUgc -5'
18066 5' -49.9 NC_004680.1 + 50749 0.7 0.86238
Target:  5'- uGAACAcCGCGAUCGUgcuUGGCGCGAUa -3'
miRNA:   3'- cCUUGUaGUGCUGGUA---GCUGUGCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.