miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18067 3' -53.9 NC_004680.1 + 7443 1.09 0.001513
Target:  5'- gCAACAACACCACCGCCGACCGGUAUCu -3'
miRNA:   3'- -GUUGUUGUGGUGGCGGCUGGCCAUAG- -5'
18067 3' -53.9 NC_004680.1 + 4776 0.75 0.326839
Target:  5'- uGGCGACACCgaaGaagagaugcgcgaauCCGCCGACCGGUGg- -3'
miRNA:   3'- gUUGUUGUGG---U---------------GGCGGCUGGCCAUag -5'
18067 3' -53.9 NC_004680.1 + 12538 0.74 0.36516
Target:  5'- cCGGCAGCcaucggGCCGCCGCCaccACCGGUGg- -3'
miRNA:   3'- -GUUGUUG------UGGUGGCGGc--UGGCCAUag -5'
18067 3' -53.9 NC_004680.1 + 12375 0.74 0.36516
Target:  5'- -cGCGGguCCACUGCCGGguccggcuCCGGUGUCg -3'
miRNA:   3'- guUGUUguGGUGGCGGCU--------GGCCAUAG- -5'
18067 3' -53.9 NC_004680.1 + 41309 0.73 0.400921
Target:  5'- gGACGAUGCCGCUGCUGaucgccGCCGGcAUCa -3'
miRNA:   3'- gUUGUUGUGGUGGCGGC------UGGCCaUAG- -5'
18067 3' -53.9 NC_004680.1 + 9305 0.73 0.410203
Target:  5'- aCAGCAcGCGCCACCGCgccauUGACCGGc--- -3'
miRNA:   3'- -GUUGU-UGUGGUGGCG-----GCUGGCCauag -5'
18067 3' -53.9 NC_004680.1 + 24859 0.73 0.410203
Target:  5'- aAGCggUGCCGCCGCUGcCCGGagAUCc -3'
miRNA:   3'- gUUGuuGUGGUGGCGGCuGGCCa-UAG- -5'
18067 3' -53.9 NC_004680.1 + 54013 0.73 0.429163
Target:  5'- aCGGCAACACCAUCGaguugaucUCGAUCGGcAUCg -3'
miRNA:   3'- -GUUGUUGUGGUGGC--------GGCUGGCCaUAG- -5'
18067 3' -53.9 NC_004680.1 + 24331 0.73 0.433016
Target:  5'- -cACGGCACCAccacauacagcacacCCGCCGuGCCGGUGc- -3'
miRNA:   3'- guUGUUGUGGU---------------GGCGGC-UGGCCAUag -5'
18067 3' -53.9 NC_004680.1 + 22712 0.72 0.448629
Target:  5'- ---gAACGCCACCGCC-ACCGGa--- -3'
miRNA:   3'- guugUUGUGGUGGCGGcUGGCCauag -5'
18067 3' -53.9 NC_004680.1 + 27348 0.72 0.458543
Target:  5'- gCAGCGuCGCCGCCGCCGccuuCCugGGUGUg -3'
miRNA:   3'- -GUUGUuGUGGUGGCGGCu---GG--CCAUAg -5'
18067 3' -53.9 NC_004680.1 + 26333 0.72 0.478715
Target:  5'- gGGCGACACCGCCGaggaGuCCGGUuccgAUCg -3'
miRNA:   3'- gUUGUUGUGGUGGCgg--CuGGCCA----UAG- -5'
18067 3' -53.9 NC_004680.1 + 5020 0.7 0.552384
Target:  5'- aGGCGGCAgCGCCGCauacucaGCCGGUGUg -3'
miRNA:   3'- gUUGUUGUgGUGGCGgc-----UGGCCAUAg -5'
18067 3' -53.9 NC_004680.1 + 15177 0.7 0.552384
Target:  5'- uGACAGCGCauggaccggCACCGCUGAacugcgCGGUAUCc -3'
miRNA:   3'- gUUGUUGUG---------GUGGCGGCUg-----GCCAUAG- -5'
18067 3' -53.9 NC_004680.1 + 37883 0.7 0.552384
Target:  5'- cCGGCAugACUGCCGCCGAggaugcguaCCGGcGUg -3'
miRNA:   3'- -GUUGUugUGGUGGCGGCU---------GGCCaUAg -5'
18067 3' -53.9 NC_004680.1 + 12655 0.7 0.55996
Target:  5'- gAGC-GCACCGCCGCCGuccaugccgaucccACCGGa--- -3'
miRNA:   3'- gUUGuUGUGGUGGCGGC--------------UGGCCauag -5'
18067 3' -53.9 NC_004680.1 + 33038 0.7 0.563216
Target:  5'- gCAACGGCaACCGCCGCUacaaAUgGGUGUCc -3'
miRNA:   3'- -GUUGUUG-UGGUGGCGGc---UGgCCAUAG- -5'
18067 3' -53.9 NC_004680.1 + 21573 0.7 0.585042
Target:  5'- gCAACGGCACCGCgcacaGUCaGCCGGUGa- -3'
miRNA:   3'- -GUUGUUGUGGUGg----CGGcUGGCCAUag -5'
18067 3' -53.9 NC_004680.1 + 16874 0.7 0.585042
Target:  5'- gAACGACGCUuCCGCCGGugUCGG-GUCg -3'
miRNA:   3'- gUUGUUGUGGuGGCGGCU--GGCCaUAG- -5'
18067 3' -53.9 NC_004680.1 + 48488 0.7 0.586138
Target:  5'- gCAGCAACACgauucguccggggaaGCCGCUGcCCGGUcggGUCa -3'
miRNA:   3'- -GUUGUUGUGg--------------UGGCGGCuGGCCA---UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.