miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18067 3' -53.9 NC_004680.1 + 57450 0.67 0.752563
Target:  5'- -uACAACcgcgccgccacccaaACCACCGCUGAuguuCUGGUGUUc -3'
miRNA:   3'- guUGUUG---------------UGGUGGCGGCU----GGCCAUAG- -5'
18067 3' -53.9 NC_004680.1 + 55776 0.69 0.639036
Target:  5'- aAGCGGCGCUcgccaaaGCCGCCacccucgcgauGGCCGGUAa- -3'
miRNA:   3'- gUUGUUGUGG-------UGGCGG-----------CUGGCCAUag -5'
18067 3' -53.9 NC_004680.1 + 12144 0.69 0.651177
Target:  5'- gGGCAACAUCaacccguccggcGCUGCCGcCCaGGUAUCc -3'
miRNA:   3'- gUUGUUGUGG------------UGGCGGCuGG-CCAUAG- -5'
18067 3' -53.9 NC_004680.1 + 24884 0.68 0.684139
Target:  5'- gGAUAACACUaguggcgguGCCGCCGG-CGGUGg- -3'
miRNA:   3'- gUUGUUGUGG---------UGGCGGCUgGCCAUag -5'
18067 3' -53.9 NC_004680.1 + 54367 0.68 0.684139
Target:  5'- aGAUGAU-CCACuUGCCGACCGGgAUCc -3'
miRNA:   3'- gUUGUUGuGGUG-GCGGCUGGCCaUAG- -5'
18067 3' -53.9 NC_004680.1 + 2859 0.67 0.727333
Target:  5'- uGACcGguUCGCCGCCG-CCGGUGg- -3'
miRNA:   3'- gUUGuUguGGUGGCGGCuGGCCAUag -5'
18067 3' -53.9 NC_004680.1 + 20876 0.67 0.727333
Target:  5'- gGACAACGCCAUgGgCCugucACCGGaGUCg -3'
miRNA:   3'- gUUGUUGUGGUGgC-GGc---UGGCCaUAG- -5'
18067 3' -53.9 NC_004680.1 + 27277 0.67 0.737922
Target:  5'- gCGGCGACGCUGCCGCCGAgaaCCu----- -3'
miRNA:   3'- -GUUGUUGUGGUGGCGGCU---GGccauag -5'
18067 3' -53.9 NC_004680.1 + 18325 0.67 0.748403
Target:  5'- gGAUGACGCCGaggucaaGCaGACCGGUGUUa -3'
miRNA:   3'- gUUGUUGUGGUgg-----CGgCUGGCCAUAG- -5'
18067 3' -53.9 NC_004680.1 + 40822 0.69 0.629096
Target:  5'- -uGCGACuACCACggugugcggguCGCCGA-CGGUAUCg -3'
miRNA:   3'- guUGUUG-UGGUG-----------GCGGCUgGCCAUAG- -5'
18067 3' -53.9 NC_004680.1 + 55870 0.69 0.618054
Target:  5'- -cGCGACaACCAUCGUCGuccaACCGGUAa- -3'
miRNA:   3'- guUGUUG-UGGUGGCGGC----UGGCCAUag -5'
18067 3' -53.9 NC_004680.1 + 48488 0.7 0.586138
Target:  5'- gCAGCAACACgauucguccggggaaGCCGCUGcCCGGUcggGUCa -3'
miRNA:   3'- -GUUGUUGUGg--------------UGGCGGCuGGCCA---UAG- -5'
18067 3' -53.9 NC_004680.1 + 12375 0.74 0.36516
Target:  5'- -cGCGGguCCACUGCCGGguccggcuCCGGUGUCg -3'
miRNA:   3'- guUGUUguGGUGGCGGCU--------GGCCAUAG- -5'
18067 3' -53.9 NC_004680.1 + 41309 0.73 0.400921
Target:  5'- gGACGAUGCCGCUGCUGaucgccGCCGGcAUCa -3'
miRNA:   3'- gUUGUUGUGGUGGCGGC------UGGCCaUAG- -5'
18067 3' -53.9 NC_004680.1 + 54013 0.73 0.429163
Target:  5'- aCGGCAACACCAUCGaguugaucUCGAUCGGcAUCg -3'
miRNA:   3'- -GUUGUUGUGGUGGC--------GGCUGGCCaUAG- -5'
18067 3' -53.9 NC_004680.1 + 22712 0.72 0.448629
Target:  5'- ---gAACGCCACCGCC-ACCGGa--- -3'
miRNA:   3'- guugUUGUGGUGGCGGcUGGCCauag -5'
18067 3' -53.9 NC_004680.1 + 15177 0.7 0.552384
Target:  5'- uGACAGCGCauggaccggCACCGCUGAacugcgCGGUAUCc -3'
miRNA:   3'- gUUGUUGUG---------GUGGCGGCUg-----GCCAUAG- -5'
18067 3' -53.9 NC_004680.1 + 37883 0.7 0.552384
Target:  5'- cCGGCAugACUGCCGCCGAggaugcguaCCGGcGUg -3'
miRNA:   3'- -GUUGUugUGGUGGCGGCU---------GGCCaUAg -5'
18067 3' -53.9 NC_004680.1 + 33038 0.7 0.563216
Target:  5'- gCAACGGCaACCGCCGCUacaaAUgGGUGUCc -3'
miRNA:   3'- -GUUGUUG-UGGUGGCGGc---UGgCCAUAG- -5'
18067 3' -53.9 NC_004680.1 + 21573 0.7 0.585042
Target:  5'- gCAACGGCACCGCgcacaGUCaGCCGGUGa- -3'
miRNA:   3'- -GUUGUUGUGGUGg----CGGcUGGCCAUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.