miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18067 3' -53.9 NC_004680.1 + 1759 0.66 0.808391
Target:  5'- cCAACAACAU--CUGCCGGCCcGUcgCa -3'
miRNA:   3'- -GUUGUUGUGguGGCGGCUGGcCAuaG- -5'
18067 3' -53.9 NC_004680.1 + 1830 0.66 0.827015
Target:  5'- uCGACGAuCGCCGCguggGCgGGCCGGUucccggAUCg -3'
miRNA:   3'- -GUUGUU-GUGGUGg---CGgCUGGCCA------UAG- -5'
18067 3' -53.9 NC_004680.1 + 2859 0.67 0.727333
Target:  5'- uGACcGguUCGCCGCCG-CCGGUGg- -3'
miRNA:   3'- gUUGuUguGGUGGCGGCuGGCCAUag -5'
18067 3' -53.9 NC_004680.1 + 3324 0.67 0.727333
Target:  5'- uGugAGCACCcUCaGCCGACUGGU-UCg -3'
miRNA:   3'- gUugUUGUGGuGG-CGGCUGGCCAuAG- -5'
18067 3' -53.9 NC_004680.1 + 4001 0.66 0.817801
Target:  5'- gCAGCGGCguccaguucuACCGCCGCgucuUGACCGGc--- -3'
miRNA:   3'- -GUUGUUG----------UGGUGGCG----GCUGGCCauag -5'
18067 3' -53.9 NC_004680.1 + 4776 0.75 0.326839
Target:  5'- uGGCGACACCgaaGaagagaugcgcgaauCCGCCGACCGGUGg- -3'
miRNA:   3'- gUUGUUGUGG---U---------------GGCGGCUGGCCAUag -5'
18067 3' -53.9 NC_004680.1 + 5020 0.7 0.552384
Target:  5'- aGGCGGCAgCGCCGCauacucaGCCGGUGUg -3'
miRNA:   3'- gUUGUUGUgGUGGCGgc-----UGGCCAUAg -5'
18067 3' -53.9 NC_004680.1 + 5207 0.66 0.789022
Target:  5'- gGACuACAagGCCGCUGGCCGGc--- -3'
miRNA:   3'- gUUGuUGUggUGGCGGCUGGCCauag -5'
18067 3' -53.9 NC_004680.1 + 6265 0.69 0.651177
Target:  5'- uCGACGAuCACCACUGU--GCCGGUAa- -3'
miRNA:   3'- -GUUGUU-GUGGUGGCGgcUGGCCAUag -5'
18067 3' -53.9 NC_004680.1 + 6375 0.67 0.737922
Target:  5'- uCAGCGAUACCGCCugcgaugaaaCCGAacCCGGcGUCa -3'
miRNA:   3'- -GUUGUUGUGGUGGc---------GGCU--GGCCaUAG- -5'
18067 3' -53.9 NC_004680.1 + 7443 1.09 0.001513
Target:  5'- gCAACAACACCACCGCCGACCGGUAUCu -3'
miRNA:   3'- -GUUGUUGUGGUGGCGGCUGGCCAUAG- -5'
18067 3' -53.9 NC_004680.1 + 8360 0.66 0.785067
Target:  5'- uCGGCAGCACCuuguacgucagguCCGCCGugUcagGGUcgGUCu -3'
miRNA:   3'- -GUUGUUGUGGu------------GGCGGCugG---CCA--UAG- -5'
18067 3' -53.9 NC_004680.1 + 9010 0.66 0.808391
Target:  5'- cCAGCAGCACgACCGuuGAUCuGcuUCg -3'
miRNA:   3'- -GUUGUUGUGgUGGCggCUGGcCauAG- -5'
18067 3' -53.9 NC_004680.1 + 9305 0.73 0.410203
Target:  5'- aCAGCAcGCGCCACCGCgccauUGACCGGc--- -3'
miRNA:   3'- -GUUGU-UGUGGUGGCG-----GCUGGCCauag -5'
18067 3' -53.9 NC_004680.1 + 10095 0.66 0.798794
Target:  5'- gCAGCGACGUCgauGCCGgcCCGACCGGUc-- -3'
miRNA:   3'- -GUUGUUGUGG---UGGC--GGCUGGCCAuag -5'
18067 3' -53.9 NC_004680.1 + 12144 0.69 0.651177
Target:  5'- gGGCAACAUCaacccguccggcGCUGCCGcCCaGGUAUCc -3'
miRNA:   3'- gUUGUUGUGG------------UGGCGGCuGG-CCAUAG- -5'
18067 3' -53.9 NC_004680.1 + 12375 0.74 0.36516
Target:  5'- -cGCGGguCCACUGCCGGguccggcuCCGGUGUCg -3'
miRNA:   3'- guUGUUguGGUGGCGGCU--------GGCCAUAG- -5'
18067 3' -53.9 NC_004680.1 + 12470 0.68 0.716649
Target:  5'- aGACGACACCGgaGCCGGacCCGGc--- -3'
miRNA:   3'- gUUGUUGUGGUggCGGCU--GGCCauag -5'
18067 3' -53.9 NC_004680.1 + 12538 0.74 0.36516
Target:  5'- cCGGCAGCcaucggGCCGCCGCCaccACCGGUGg- -3'
miRNA:   3'- -GUUGUUG------UGGUGGCGGc--UGGCCAUag -5'
18067 3' -53.9 NC_004680.1 + 12655 0.7 0.55996
Target:  5'- gAGC-GCACCGCCGCCGuccaugccgaucccACCGGa--- -3'
miRNA:   3'- gUUGuUGUGGUGGCGGC--------------UGGCCauag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.