miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18073 3' -58.1 NC_004680.1 + 8944 1.11 0.000424
Target:  5'- uGAACGAUCCGCACCUCACGCGGCGGCg -3'
miRNA:   3'- -CUUGCUAGGCGUGGAGUGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 41685 0.75 0.177555
Target:  5'- -cGCGAUCUGCACC-CACaaGGaCGGCg -3'
miRNA:   3'- cuUGCUAGGCGUGGaGUGcgCC-GCCG- -5'
18073 3' -58.1 NC_004680.1 + 42028 0.73 0.248148
Target:  5'- ---aGAUCUGCACg-CAgUGCGGCGGCg -3'
miRNA:   3'- cuugCUAGGCGUGgaGU-GCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 18433 0.73 0.254445
Target:  5'- cGGugGuGUCCGCua-UC-CGCGGCGGCg -3'
miRNA:   3'- -CUugC-UAGGCGuggAGuGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 29889 0.72 0.260873
Target:  5'- cGGCGAUgCGCACCUgGCGCaGGUcGCu -3'
miRNA:   3'- cUUGCUAgGCGUGGAgUGCG-CCGcCG- -5'
18073 3' -58.1 NC_004680.1 + 16647 0.72 0.274124
Target:  5'- --uCGAUCCGaCugCUgGCGCGGCGa- -3'
miRNA:   3'- cuuGCUAGGC-GugGAgUGCGCCGCcg -5'
18073 3' -58.1 NC_004680.1 + 5783 0.72 0.28095
Target:  5'- uGAcCGuAUCCGCGCUcugCACGUguacGGCGGCa -3'
miRNA:   3'- -CUuGC-UAGGCGUGGa--GUGCG----CCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 3705 0.72 0.28791
Target:  5'- cGAGCaGUCUGCGCCUCAguucaGCGGUcGCa -3'
miRNA:   3'- -CUUGcUAGGCGUGGAGUg----CGCCGcCG- -5'
18073 3' -58.1 NC_004680.1 + 34558 0.72 0.295004
Target:  5'- uGGGCGAUCgucaGCAUCgccgacuacCGCGGCGGCg -3'
miRNA:   3'- -CUUGCUAGg---CGUGGagu------GCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 9205 0.71 0.3096
Target:  5'- uGugGAuUUCGCGCCggucaaugGCGCGGUGGCg -3'
miRNA:   3'- cUugCU-AGGCGUGGag------UGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 59108 0.71 0.322434
Target:  5'- cGGCGAacUCCacGCcgACCacauacaaccccgaUCACGCGGCGGCg -3'
miRNA:   3'- cUUGCU--AGG--CG--UGG--------------AGUGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 8114 0.71 0.32474
Target:  5'- uGAgGGUCCGCugCUgGaCGCGGauuCGGCg -3'
miRNA:   3'- cUUgCUAGGCGugGAgU-GCGCC---GCCG- -5'
18073 3' -58.1 NC_004680.1 + 8658 0.7 0.381987
Target:  5'- cGAACGGcgaaucgaacUCgGUgGCCUguucaCGCGCGGCGGCa -3'
miRNA:   3'- -CUUGCU----------AGgCG-UGGA-----GUGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 42177 0.69 0.417586
Target:  5'- -cAUGcgCCcCACCUCuGCGCccGGCGGCa -3'
miRNA:   3'- cuUGCuaGGcGUGGAG-UGCG--CCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 25260 0.69 0.423098
Target:  5'- cAGCcGUCCGCACCUUuuccgcuGCGCcacgacaaggugguGGUGGCg -3'
miRNA:   3'- cUUGcUAGGCGUGGAG-------UGCG--------------CCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 39512 0.69 0.426797
Target:  5'- uAGCGAUCCGUgagaucGCCgauuugCAuCGCcgGGCGGCu -3'
miRNA:   3'- cUUGCUAGGCG------UGGa-----GU-GCG--CCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 45646 0.69 0.439892
Target:  5'- gGAACaccacCCGCACCUCAauCGUcuugacgaaugcgagGGCGGCg -3'
miRNA:   3'- -CUUGcua--GGCGUGGAGU--GCG---------------CCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 32385 0.69 0.444624
Target:  5'- --cUGGUCCGCGCCauuUCGUGCGGCcgucgucgcugcgGGCg -3'
miRNA:   3'- cuuGCUAGGCGUGG---AGUGCGCCG-------------CCG- -5'
18073 3' -58.1 NC_004680.1 + 48413 0.69 0.445574
Target:  5'- cGGAUGAUCCGCGugUC-CugGaGGCGGUg -3'
miRNA:   3'- -CUUGCUAGGCGU--GGaGugCgCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 22289 0.69 0.445574
Target:  5'- cGAACGA-CCGCACaaaCUUcgGCGCGGCcucgaaccccaGGCu -3'
miRNA:   3'- -CUUGCUaGGCGUG---GAG--UGCGCCG-----------CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.